| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1033 |
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| Symbol | prfC |
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| ID | 4251106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1204741 |
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| End bp | 1206321 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117606 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_733170 |
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| Protein GI | 113969377 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00526307 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000000642839 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCAGACA ATAAAGTAGA GGTCGATAAA CGTCGCACCT TCGCGATTAT ATCGCACCCC
GACGCGGGTA AAACCACCAT TACCGAAAAA GTGCTGTTAT TCGGAAACGC GCTGCAGAAA
GCGGGTACCG TTAAGGGCAA AAAATCGGGT CAGCACGCTA AGTCTGACTG GATGGAAATG
GAAAAAGACC GTGGTATTTC AATTACAACG TCTGTCATGC AGTTCCCCTA TGGTGGCGCG
CTCGTTAACC TACTCGACAC TCCCGGCCAC GAAGACTTCT CGGAAGATAC GTACCGCACC
TTGACTGCGG TTGACTCTTG CCTGATGGTT ATCGACTCGG CAAAAGGGGT AGAAGACCGA
ACCATCAAAT TGATGGAAGT GACGCGTCTG CGCGATACGC CAATCGTGAC CTTTATGAAC
AAACTCGACC GTGATATTCG CGATCCCATC GAGCTGATGG ATGAGGTTGA GGATGTACTC
AATATCGCCT GTGCGCCTAT TACTTGGCCT ATCGGTAGTG GCAAAGAGTT TAAGGGTGTT
TACCATATTC TGCGTGATGA AGTGGTACTG TACCAGAGCG GTATGGGACA CACGATTCAA
GAGCGCCGCG TGATCGAAGG CATTGATAAC CCGGAGCTGG ACAAAGCGAT CGGTAGTTAT
GCTGCTGATT TACGTGACGA AATGGAACTG GTTCGCGGTG CATCCAACGA ATTTGATCAC
CAAGCTTTCT TAAAGGGTGA GCTCACGCCA GTCTTCTTCG GTACCGCATT GGGTAACTTC
GGTGTTGACC ATATCCTCGA TGGTATTGTG GAGTGGGCGC CAAAGCCGCT GCCTCGTGAA
AGCGATGCGC GGATGATCAT GCCTGACGAA GAAAAATTCA CCGGTTTTGT GTTTAAAATC
CAAGCTAACA TGGATCCTAA ACACCGTGAC CGCGTTGCCT TTATGCGCGT TTGCTCTGGT
CGCTATGAGC AAGGCATGAA GATGCACCAT GTGCGCATCG GTAAAGATGT TAACGTCAGC
GATGCCTTGA CCTTTATGGC GGGTGACCGT GAGCGCGCCG AAGTGGCGTA TCCTGGTGAT
ATTATTGGTT TGCATAACCA TGGGACAATC CGTATCGGTG ATACTTTCAC TCAAGGTGAA
AAGTTCCGCT TTACCGGTGT GCCTAACTTT GCGCCAGAAA TGTTTCGCCG TATTCGTCTG
CGGGATCCGC TCAAGCAAAA ACAATTGCTT AAGGGCCTAG TACAATTGTC TGAAGAAGGC
GCCGTACAGG TGTTCCGTCC ATTAGATACC AACGATCTAA TCGTCGGCGC CGTGGGTGTG
CTGCAGTTTG AAGTGGTTGT CGGCCGCTTA AAGAGCGAGT ACAACGTTGA AGCGATTTAC
GAAGGTATTA GCGTTTCAAC GGCACGCTGG GTTTATTGTA AAGATGAGCG TAAGCTAGAA
GAGTTCCGCC GTAAGTGTAG CCAAAACTTG GCACTCGATG GTGGTGATAA CTTAACTTAC
ATTGCGCCAA CTATGGTTAA CTTAAACCTT TCGATGGAAA GATACCCTGA TATCGAGTTC
GCTAAGACGC GCGAACACTA G
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| Protein sequence | MSDNKVEVDK RRTFAIISHP DAGKTTITEK VLLFGNALQK AGTVKGKKSG QHAKSDWMEM
EKDRGISITT SVMQFPYGGA LVNLLDTPGH EDFSEDTYRT LTAVDSCLMV IDSAKGVEDR
TIKLMEVTRL RDTPIVTFMN KLDRDIRDPI ELMDEVEDVL NIACAPITWP IGSGKEFKGV
YHILRDEVVL YQSGMGHTIQ ERRVIEGIDN PELDKAIGSY AADLRDEMEL VRGASNEFDH
QAFLKGELTP VFFGTALGNF GVDHILDGIV EWAPKPLPRE SDARMIMPDE EKFTGFVFKI
QANMDPKHRD RVAFMRVCSG RYEQGMKMHH VRIGKDVNVS DALTFMAGDR ERAEVAYPGD
IIGLHNHGTI RIGDTFTQGE KFRFTGVPNF APEMFRRIRL RDPLKQKQLL KGLVQLSEEG
AVQVFRPLDT NDLIVGAVGV LQFEVVVGRL KSEYNVEAIY EGISVSTARW VYCKDERKLE
EFRRKCSQNL ALDGGDNLTY IAPTMVNLNL SMERYPDIEF AKTREH
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