| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1031 |
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| Symbol | |
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| ID | 4251104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1201448 |
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| End bp | 1203547 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638117604 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_733168 |
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| Protein GI | 113969375 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000012543 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.000000583672 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAATCCAA TTGTAAAGAG TTTTGAGTAT GGTCAACATA CAGTCACCCT GGAAACAGGT
GTCATTGCAC GTCAAGCAGA CGCTGCCGTT TTAGCTAGCA TGGGTGACAC GACAGTGTTA
GTCACTGTTG TTGGTAAAAA AGAAGCTGAA GCCGGTCGTG ACTTCTTTCC TCTGACTGTT
AACTATCAAG AAAAGACCTA CGCAGCGGGT AAAATTCCTG GTGGTTTCTT TAAGCGTGAA
GGCCGTCCTT CAGAAGATGA GACATTAATC GCTCGCCTGA TCGACCGTCC AATTCGTCCT
CTTTTCCCTA ATGGCTTCAC AAACGAAGTT CAAGTGATCA TCACTGTAGT ATCCGTCGAT
CCACAAATCG AGCCGGATAT TATTTCGATG ATTGGTACTT CGGCTGCGCT TGCTATTTCG
GGTATCCCAT TCAGCGGCCC ATTAGGTGCA GCGCGTGTGG GTTACATCAA TGGCGAATAC
GTGCTGAACC CAACGGTTAC TCAGTTAGCA AACAGCCAAC TGAACCTGGT TGTTGCTGGT
ACTGAGGGCG CGGTATTGAT GGTTGAGTCA GAAGCTCAAG CCTTACCAGA AGAAGTGATG
TTAGGCTCAG TGGTTTATGG CCATGACCAA CAACAAGTGG TTATCAAAGC GATTGCTGAA
TTCAAAGCAG AAGCGGGTAA ACCAGCTTGG AATTGGACTG CACCTGTTGC CAACGAAGCC
TTAGTTGCTC AAGTTAAAGA ATTAGCCGAA GTCGGTTTAG CGCAAGCGTA TCAAATTCAA
GTTAAACAAG AGCGTTATGC TCAAGTTGCT GTGGTTAAAG CTGCTGCTAA AGAAGCGCTG
TTGGCTGCAA ACCCAGAAGT GGATTTACGT GAAGTTGACG GTCTGCTCGG TAGCTTAGAG
AAGAAAGTGG TTCGTGGTCG CATCATCCGT GGTGAGCCGC GTATCGACGG TCGTGAGCCA
GACATGGTTC GCGCATTAAG CGTATTAGCA GGCGTATTAC CACGTACTCA CGGTAGTGCA
CTGTTTACCC GTGGCGAAAC TCAAGCACTG GTAACTTGTA CACTAGGTAC TGAGCGTGAC
GCACAAAAGA TTGATAGCAT CATGGGCGAG CGTACTAACC GCTTTATGCT GCACTACAAC
TTCCCTCCTT ACTCAGTCGG TGAGACAGGT ATGGTGGGTT CACCTAAGCG TCGCGAAATC
GGTCACGGCA AGTTAGCATG GCGCGGTATT AACGCAGTCA TGCCATCTGC TGAAGAATTC
CCATACAGTG TTCGTGTGGT TTCTGAAATC ACTGAATCTA ACGGTTCAAG CTCTATGGCA
TCAGTGTGTG GTACGTCTCT TGCGCTGATG GATGCTGGTG TTCCAATCAA GACTTCTGTA
GCGGGTATCG CTATGGGTCT AGTAAAAGAA GGCGACAACT TTGTTGTTCT GTCTGACATC
TTAGGTGATG AAGACCACTT AGGTGACATG GACTTCAAAG TAGCCGGTAC TCGTGATGGT
GTTACTGCAC TGCAGATGGA CATCAAGATC GAAGGTATCA CCAAAGAAAT CATGGAAATT
GCACTGCAAC AAGCCTACGG CGCACGTGTA CATATCCTGA ACGTGATGGA CCAAGCGATT
GGTTCACACC GTGATGATAT CTCTGACCAC GCTCCACGTA TCACAACTAT CAAGATCAAC
CCAGAGAAGA TCCGTGATGT TATCGGTAAA GGCGGCGCGG TTATTCGTGC TCTGACCGAA
GAAACCGGCA CCACAATTGA ACTGGAAGAT GATGGTACAG TGAAGATTGC TTCGTCAAAT
GGTGAAGCGA CCAAAGAAGC GATCCGTCGT ATCGAAGAAA TCACTTCAGA AGTTGAAGTG
GGTCGTATCT ACAACGGTAA AGTTATCCGT ATCGTAGACT TCGGTGCCTT CGTAAACATT
CTGCCAGGCA AAGATGGTTT AGTGCACATT TCGCAAATCA GCGATGAGCG TGTTGCTAAC
GTCTCTGACC ACCTTGAACT GAACCAAGAA GTGACCGTTA AGGTAATGGA AGTGGATCGT
CAAGGTCGTG TAAGACTGTC AATCAAAGAA GCACAGACTA AAGAAGCCGC TGCTGAATAA
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| Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADAAV LASMGDTTVL VTVVGKKEAE AGRDFFPLTV
NYQEKTYAAG KIPGGFFKRE GRPSEDETLI ARLIDRPIRP LFPNGFTNEV QVIITVVSVD
PQIEPDIISM IGTSAALAIS GIPFSGPLGA ARVGYINGEY VLNPTVTQLA NSQLNLVVAG
TEGAVLMVES EAQALPEEVM LGSVVYGHDQ QQVVIKAIAE FKAEAGKPAW NWTAPVANEA
LVAQVKELAE VGLAQAYQIQ VKQERYAQVA VVKAAAKEAL LAANPEVDLR EVDGLLGSLE
KKVVRGRIIR GEPRIDGREP DMVRALSVLA GVLPRTHGSA LFTRGETQAL VTCTLGTERD
AQKIDSIMGE RTNRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI NAVMPSAEEF
PYSVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDNFVVLSDI
LGDEDHLGDM DFKVAGTRDG VTALQMDIKI EGITKEIMEI ALQQAYGARV HILNVMDQAI
GSHRDDISDH APRITTIKIN PEKIRDVIGK GGAVIRALTE ETGTTIELED DGTVKIASSN
GEATKEAIRR IEEITSEVEV GRIYNGKVIR IVDFGAFVNI LPGKDGLVHI SQISDERVAN
VSDHLELNQE VTVKVMEVDR QGRVRLSIKE AQTKEAAAE
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