| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1030 |
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| Symbol | |
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| ID | 4251103 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1199200 |
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| End bp | 1201254 |
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| Gene Length | 2055 bp |
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| Protein Length | 684 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638117603 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_733167 |
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| Protein GI | 113969374 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0216958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000239027 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACGGGCC GCTTTAAATC CCTAACTTGG AAACAAACTA ATCTCGTCGT TTTTACAGCG
CTTTTTTTCG CTATCGCCAT CTTCGTTGTT GAAATTGCCC TCGTCGTCAT CGCCACTAAA
CAACAGCTAA CCACGACTCA GCAAGAATTA CTGGACTCCG TTGAACAACC CGCCGCTAAT
GCCGTGTGGG CATTGGATGA TAATCTCGCA AGGCAAACCC TTGAAGGAGC AATTAAAGTT
GAACATGTAG GGTCAGCGGT GATTGAACTC GATGATGGCT CCATGTTCGT GTCCGTTAGC
AATAATAAGA AAAACGACTC ACAGACCTTT ATTAGTCTTA GCAACAAACT CTTTGATGAC
TTAAAAGAAA TTTCGCGCCC CTTGTATCGG CCCTTTTATT TTGAAGGCAC ACAAAAGCAG
CAACTGATTG GCACATTAAC CATTTTTTAC GACACACAGG AACTGACCAA TACCCTCTTT
AGCCAGTTAA GATTCAGCTT TTTTGCCACC CTGGCCCGCG CGCTTCTGCT CACTTTAGTG
TTATCCGTAG TATTCCACCG CTTCTTAACT CAGCCGATAG CTCGTATTAG TGAGGCGATA
GATAAAATCT CCCCCGATTC GCCCGATGAA AACCTGCTGC CCATGTCAAA TGCCCATAAG
GATGATGAGC TTGGCTTGGT GACATCGAAG TTTAACCAAA TCCTTATACA GTTCAGTCAG
ACCCAATCCA AACTGCGTAA GATGGCCACC CGCGACCCAT TAACGGGCCT GCCAAATCGC
ACTCTGTTAC TCGAAACCAT TGCCGTCACT ATCCAGCGCT CACGGGTTCA TAAAAGCAGT
TTTGCTTTGA TGTTTATCGA CTTAGACCGA TTCAAAAATA TCAATGACTC CCTAGGCCAC
GCCCTTGGCG ATCAATTCCT CGCCCGCATC GCCCGTATTT TAGAACGCGT TGTGGGTGAT
AAAGGTTCAG TATCACGCTT AGGTGGCGAT GAGTTCGTGA TTTTAGCCGA CTCAGTTCAC
TCCCCCGATC AAGCCGCCGA CTTTGTCGAT AAACTCTTAG TGCAGCTCAA TGTGCCGATT
CAGCTGAATG AACATGCGAT TCACCCGGCG GCATCAATTG GGATTTCCAT CTATCCAGAA
GATGGCAACA GCGCCGAAGA TCTTATCCGT CATGCCGATA TCGCCATGTA CAGTGCCAAG
GCCGCAGGGT CGAATCAATG GGCCTTCTTC AAGCAGCAAA TGACCGAGCG AGCGGCCGTT
CGGCTGCGTA CCGAAGCCTC GCTACATGAT GCCTTGAAAA ACAATGAATT TTTGCTCTAC
TTCCAGCCCA AGTTGGATTT GCAAACCGGA AAGATCACTG GCTGTGAAGC CTTGATCCGT
TGGCAAAAAG ATGGCCGCTT AATCAGCCCT ATTTCCTTTA TTCCGGTGGC TGAAGAGACT
GGTATCATCA TTCCCATTGG ACGCTGGGTT ATCGAACAAA GCTGCCGAGT ACTGCGTGAA
TGGCAGAAAA AATATAACTT TGCGATTCCT ATCGCCATCA ACGTTGCTTC ACAACAATTT
GCCGATGCCA GCTTAGTGTC AGACATTAAA CAAATGGCGC TGCGTTACCA AATTCAACCG
GAATTACTCG AAATTGAAAT CACCGAAACA TCCTTGATGA ATGACATTGA GCTTGCGATC
AACAAGTTAG AACAACTCAA ATCGGCGGGG TTTGGTATCG CCGTCGATGA TTTTGGGACC
GGTTATTCCT CTCTGTCTTA CCTGCGGCAT TTGCCGATCA CTACCATGAA AATCGATCGT
TGCTTCGTTT CTGATTTACC GGAAGACAGT GCGATCGCCT CGACCATTTT GATGTTAGGT
AAGCAATTAA ATCTCACTAT CGTTGCCGAA GGGATTGAAA ACGAACAGCA ACTCGATTGG
CTCAAGCGTA ATCAATGCCA AATTGGTCAA GGATTTTACT TTAGCCAACC CTTACCGCAG
GCGGAGTTTG AGGCACTGTA CATTGCCAAT CAAACCGCAA CTATTAGCAA TATCGATGGA
TTACGTGGCG CCTAA
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| Protein sequence | MTGRFKSLTW KQTNLVVFTA LFFAIAIFVV EIALVVIATK QQLTTTQQEL LDSVEQPAAN
AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNDSQTF ISLSNKLFDD
LKEISRPLYR PFYFEGTQKQ QLIGTLTIFY DTQELTNTLF SQLRFSFFAT LARALLLTLV
LSVVFHRFLT QPIARISEAI DKISPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ
TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKSS FALMFIDLDR FKNINDSLGH
ALGDQFLARI ARILERVVGD KGSVSRLGGD EFVILADSVH SPDQAADFVD KLLVQLNVPI
QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KITGCEALIR WQKDGRLISP ISFIPVAEET
GIIIPIGRWV IEQSCRVLRE WQKKYNFAIP IAINVASQQF ADASLVSDIK QMALRYQIQP
ELLEIEITET SLMNDIELAI NKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVSDLPEDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKRNQCQIGQ GFYFSQPLPQ
AEFEALYIAN QTATISNIDG LRGA
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