| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1029 |
|---|
| Symbol | rpsO |
|---|
| ID | 4251102 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1198843 |
|---|
| End bp | 1199112 |
|---|
| Gene Length | 270 bp |
|---|
| Protein Length | 89 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638117602 |
|---|
| Product | 30S ribosomal protein S15 |
|---|
| Protein accession | YP_733166 |
|---|
| Protein GI | 113969373 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0184] Ribosomal protein S15P/S13E |
|---|
| TIGRFAM ID | [TIGR00952] ribosomal protein S15, bacterial/organelle |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.553716 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000000919084 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTAA GTACTGAAGC GAAAGCAAAG ATCCTGGCTG AATTTGGCCG TGGCGCAAAC
GACACTGGTT CAACTGAAGT TCAAGTTGCG CTGTTAACTG CTCAAATCAA CCATTTGCAA
GATCACTTCA AAGAGCACAT CCACGATCAC CACTCACGTC GTGGTCTGTT ACGCATGGTT
AGCGCTCGTC GTAAGTTATT AGCTTACCTG AAGCGTACTG AAGCAGCGCG TTACAATGAG
CTGATCCAAA AGTTAGGTTT ACGTCGTTAA
|
|---|
| Protein sequence | MSLSTEAKAK ILAEFGRGAN DTGSTEVQVA LLTAQINHLQ DHFKEHIHDH HSRRGLLRMV
SARRKLLAYL KRTEAARYNE LIQKLGLRR
|
|---|
| |