Gene Shewmr4_1027 details

Gene Information

• Locus tag: Shewmr4_1027
• Symbol: rbfA
• ID: 4251100
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella sp. MR-4
• Kingdom: Bacteria
• Replicon accession: NC_008321
• Strand: +
• Start bp: 1197324
• End bp: 1197764
• Gene Length: 441 bp
• Protein Length: 146 aa
• Translation table: 11
• GC content: 46%
• IMG OID: 638117600
• Product: ribosome-binding factor A
• Protein accession: YP_733164
• Protein GI: 113969371
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0858] Ribosome-binding factor A
• TIGRFAM ID: [TIGR00082] ribosome-binding factor A

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 5
• Fosmid unclonability p-value: 0.00000106496
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGGCAAAAG AATTCAGTCG TACACGTCGC ATAGGCCAGC AGTTGCAGCA AGAGCTAGCT 
GTTGTGTTAC AACGCGACAT GAAAGATCCC CGTATTGGTT TTGTAACCGT TAATGACGTC 
GATGTGTCCC GCGATTTAAG TTACGCCAAG GTATTTGTGA CCTTCTTCGA AGAAGATAAA 
GAGGTAGTTC AAGAAAAGCT CAATGCCTTG ATTGCCGCAG CACCTTATAT TCGTACCTTA 
GTTGCAGGCC GCATGAAGCT GAGAGTTATG CCTGAAATCC GTTTCGTGTA TGACAGTTCA 
TTGGTTGAAG GTATGCGTAT GTCTAACCTC GTTAGCCAAG TGATCAACAG CGACAAAGCC 
AAGCAACAGC AGTTTGGTAG TGCCGACGAT GTTACGGAGA ATGACATCGA CGAAGCTGAT 
GACACCGAAG GTAAAGCGTA A 

 

Protein sequence

MAKEFSRTRR IGQQLQQELA VVLQRDMKDP RIGFVTVNDV DVSRDLSYAK VFVTFFEEDK 
EVVQEKLNAL IAAAPYIRTL VAGRMKLRVM PEIRFVYDSS LVEGMRMSNL VSQVINSDKA 
KQQQFGSADD VTENDIDEAD DTEGKA