| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1025 |
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| Symbol | nusA |
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| ID | 4251098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1193079 |
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| End bp | 1194578 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638117598 |
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| Product | transcription elongation factor NusA |
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| Protein accession | YP_733162 |
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| Protein GI | 113969369 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00167997 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000356504 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAAAG AGATTCTGCT AGTCGCTGAG GCGGTTTCAA ATGAAAAGGC CGTTCCACGC
GAGAAAATTT TTGAAGCGCT AGAGACAGCT CTGGCAACTG CTACCAAGAA AAAATACGAA
GGTGATATCG ACGTTCGTGT TGCTATTGAT CGTAAAACGG GCGCCTATGA AACTTTCCGC
CGTTGGATGG TGATTGATGA CAACGGCGTC GCGTTAGAAA ACCCATACCG CGAAATCACC
TTGGAAGCTG CGCGTTTTGA AAACCCAGAA ATCCAGCCTG GTGATTTTAT CGAAGACGAG
ATCGAATCAG TGGCATTCGA CCGTATTACC ACCCAAACCG CTAAGCAAGT GATCGTACAA
AAAGTACGTG AAGCCGAGCG TGCGCAAGTG GTTGAACAGT TCCAAGATAA AGAAGGCGAG
TTGATCACTG GTGTTGTGAA AAAAGCGACC CGTGAAAGCG TAGTCGTTGA CTTAGGCAAT
AACGCCGACG GCGTATTGTT CCGTGAAGAT TTAATTTCTC GCGAATCTTT CCGTCCTGGT
GACCGTGTGC GTGCATTGCT TTATTCAGTC CGTCCTGAAG CTCGTGGTGC GCAGTTGTTC
TTAACCCGCA CTAAGCCAGA CATGCTGATT GAGCTGTTCC GCGTAGAAGT ACCTGAAATT
GCCGACGAGC TGATCGAAGT CATGGGTGCC GCGCGCGACC CAGGTGCACG CGCTAAGATC
GCGGTGAAAT CAAACGACCG TCGCATCGAT CCAATCGGTG CTTGCGTTGG TATGCGTGGT
GCACGTGTTC AAGCCGTATC GAATGAACTC GGTGGTGAGC GTGTGGATAT CGTATTGTGG
GATGACAATC CAGCACAATA TGTGATCAAC GCAATGGCGC CTGCTGATGT GGCTTCTATC
ATCGTTGATG AAGACAACCA CTCAATGGAT ATCGCTGTTG AAGCGGAAAG TTTAGCTCAG
GCCATTGGTC GCAATGGTCA AAACGTACGT TTAGCGACTC AGTTGACTGG CTGGGAGCTG
AACGTGATGA CAGTAGAAGA CATGAACAAG AAACACCAAG CCGAAAGCGC CAAGGTGAAG
AGCTTATTCA TGAAATCTCT GGATGTAGAT GAAGATTTTG CACAAGTACT GGCCGACGAA
GGTTTTACCT CGCTGGAAGA AGTGGCTTAT GTGCCTGTGT CAGAATTATT AGCAATTGAC
GGCTTCGATG AGGATATCGT TGAAGCGTTA CGTGAACGTG CAAAGGCTGC GATCTCTACT
CGAGCGCTCG CATCTGAAGA AGCACTAGAT GGTGTGGAGC CAAGTGAAGA GTTATTAGCA
CTTGAAGGTG TTGAAAGACA CTTAGCCTAT GTTTTAGCAA GCAAAGGTAT CGTGACTCTA
GAAGACTTGG CTGAACAAGG CATTGATGAT TTGATCGAAA TTGAAGAATT GACAGAAGAA
AAAGCAGGTG CGCTGATCAT GGCTGCCCGC AACATCTGTT GGTTTGGCGA AGAAGCATAA
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| Protein sequence | MNKEILLVAE AVSNEKAVPR EKIFEALETA LATATKKKYE GDIDVRVAID RKTGAYETFR
RWMVIDDNGV ALENPYREIT LEAARFENPE IQPGDFIEDE IESVAFDRIT TQTAKQVIVQ
KVREAERAQV VEQFQDKEGE LITGVVKKAT RESVVVDLGN NADGVLFRED LISRESFRPG
DRVRALLYSV RPEARGAQLF LTRTKPDMLI ELFRVEVPEI ADELIEVMGA ARDPGARAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQYVIN AMAPADVASI
IVDEDNHSMD IAVEAESLAQ AIGRNGQNVR LATQLTGWEL NVMTVEDMNK KHQAESAKVK
SLFMKSLDVD EDFAQVLADE GFTSLEEVAY VPVSELLAID GFDEDIVEAL RERAKAAIST
RALASEEALD GVEPSEELLA LEGVERHLAY VLASKGIVTL EDLAEQGIDD LIEIEELTEE
KAGALIMAAR NICWFGEEA
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