Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1015 |
Symbol | secD |
ID | 4251053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 1182612 |
End bp | 1184486 |
Gene Length | 1875 bp |
Protein Length | 624 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638117586 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_733152 |
Protein GI | 113969359 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.213021 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.00788226 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGATAAAA TTCAGAGTAA AAAGCTGTTA AATCACTATT CAGCTTGGAA ATACGTTGTG CTTATTGTCA CGATTATCGT GATGTTATTT AGTGCCTTAC CGACTTGGTA TGGAGAAGAT GCCGCCGTGC AGGTGGGCGC TAAAGCGGGG CTTAATTTAA CCCCCATCGA ACTGCGGGAT AAATTAAAGG CGCAGGGCGT TGATGTTAAG CGTATCGAGG TTAAGCATGC CCAACATGGC AACGCCAACA GCTCAGAAGA CGGGCAAACC CTTATTGTAC TCAATGATGA CAGCGAGCAA ACCTTAGTGA AGACCTTAGT GTCATCCATG GTGAGTGAGC CGAAAGAGCT CACGCTCGCA CTGGTGAGTG CAGCGCCAAG TTGGTTGCAA AATATGGGCT TTGAACCGAT TAAACTCGGG CTCGACTTAC GCGGAGGAGT GCAATTTTTG CTGGATGTTG ATGTGCAGCC CGTCTATCAA GCCCAGGCCG ATGCATTAGT CGAGTCCCTT AGGCAGTTTT TGCGTGAACA GCAAATTCGC GGCGCCAGTG TGCGTATTGA TAGCACGCGC GATGACGCAG GGTTGCAAAT TGCAATTGCA TTTAATGACG CGGCTGAATC CACCAATAAT GCGCGCTCAG CTATTCGCCA ATTTATGCAA CAAAGCTACC CGACTTGGCA ATTAACCAAT GCGGATAATG GCTTAGTCGT ACAGCTCGCT CAAGAAGAGC AAATCAAGTT ACGTAATTTA ACCGTGCAGC AAAACCTGCA AATTATGCGT AGCCGGATTG AAGAGCTGGG CATCACTGAG GCTTTAGTAC AACGTCAGGG CGAACACCGT ATCCGCATCG AGCTGCCCGG TGTACAAGAC CCCGCTGCCG CGAAAAACGT GATTGGTGCG ACCGCTAGTC TGGCCTTTTT TGAAGTCAAA GAATCGGGTT CAGTGAATGC GCAGGTACTG AAGGATAAAT CAGGCAATCC TGTTTATGTG GCACGCACGC CGATATTGGG CGGCGATCAT ATTGTCGATG CCCGCGCCAA TATTGGCGAA ATGGGCATGG CCGAAGTGAA CATTCACCTC GACCGTATCG GCGGCCAAAA AATGTCGGAG TTTTCCCGCG CCAATATCGA TAAGCCTATG GCAACATCCT ACAGCGAATA TAGCCGGGAT GAGCAGGGCA AAGCTAAGCA AACCCAAGAG ATCATCAGTG TCGCGACCAT TCAATCGCAG CTGGGAGATC GTTTCAGGAT CACTGGCGCA GGCACCTATC AAGAGGCGCA GCAATTAGCC TTGTTGCTAC GCGCTGGCTC AATGACGGCG CCTGTAACTA TTGTTGAAGA ACGTACCATT GGCCCAACCC TTGGCGCCGA AAACATTCAA AACGGCTTTG CAGCGCTCGG CCTTGGTATG GGAATTACCT TGCTGTTTAT GGCGCTCTGG TATCGCCGTC TCGGTTGGGT GGCCAACGTG GCCTTGATTG CCAACATGGT GATCCTCTTT GGTTTGCTGG CACTGATCCC CGGCGCAGTA TTGACCTTAC CCGGCATTGC CGGTCTGGTG CTGACGGTTG GTATGGCGGT CGATACCAAC GTACTGATCT TCGAGCGGAT TAAAGACAAG TTGAAAGAGG GGCGCAGCTT TGCCCTGGCG ATTGACACTG GCTTTGACAG TGCGTTCTCA ACCATTTTCG ACGCTAACTT CACCACTATG ATCACTGCGG TTGTGCTCTA TTCCATTGGT AATGGCCCCA TCCAAGGTTT TGCCTTGACC TTAGGTTTAG GTCTGTTGAC CAGTATGTTT ACCGGTATTT TTGCCTCAAG AGCCTTAATC AACCTAGTGT ATGGGCGTGA TGCGCGCCGC CATGTGAGGG TATAA
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Protein sequence | MDKIQSKKLL NHYSAWKYVV LIVTIIVMLF SALPTWYGED AAVQVGAKAG LNLTPIELRD KLKAQGVDVK RIEVKHAQHG NANSSEDGQT LIVLNDDSEQ TLVKTLVSSM VSEPKELTLA LVSAAPSWLQ NMGFEPIKLG LDLRGGVQFL LDVDVQPVYQ AQADALVESL RQFLREQQIR GASVRIDSTR DDAGLQIAIA FNDAAESTNN ARSAIRQFMQ QSYPTWQLTN ADNGLVVQLA QEEQIKLRNL TVQQNLQIMR SRIEELGITE ALVQRQGEHR IRIELPGVQD PAAAKNVIGA TASLAFFEVK ESGSVNAQVL KDKSGNPVYV ARTPILGGDH IVDARANIGE MGMAEVNIHL DRIGGQKMSE FSRANIDKPM ATSYSEYSRD EQGKAKQTQE IISVATIQSQ LGDRFRITGA GTYQEAQQLA LLLRAGSMTA PVTIVEERTI GPTLGAENIQ NGFAALGLGM GITLLFMALW YRRLGWVANV ALIANMVILF GLLALIPGAV LTLPGIAGLV LTVGMAVDTN VLIFERIKDK LKEGRSFALA IDTGFDSAFS TIFDANFTTM ITAVVLYSIG NGPIQGFALT LGLGLLTSMF TGIFASRALI NLVYGRDARR HVRV
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