Gene Shewmr4_0988 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0988 
Symbol 
ID4251026 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1154744 
End bp1155586 
Gene Length843 bp 
Protein Length280 aa 
Translation table11 
GC content50% 
IMG OID638117552 
Productrare lipoprotein A 
Protein accessionYP_733125 
Protein GI113969332 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0797] Lipoproteins 
TIGRFAM ID[TIGR00413] rare lipoprotein A 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000365675 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.010381 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTAA GAAATAATCT TTTACAGCTC TTGATGCTCG GCTGCTGTTT TGCGCTTGCG 
GCCTGCTCGA GTTCTAATTC TGGCTCGGCC AGCGAGAAGA ACAAGAACAT GGATCCCAAC
AAGGGCCGCT ATGCGCTAAA AAACGATAAG ATGCCCATCA ATCCACCCAA TGTGGACCAT
GTGCCAAACG CGACCCCAAA ATACGAGCCC TACAGCCGTC GCGGTAATAA ACCTTACACG
GTTTATGGTG AGTCCTATAC GGTGTTAGAT TCGGGCCAAG GCTTTTCCGA GACTGGCCGC
GCCTCATGGT ATGGTGAGAA ATTCCACGGC TATGAGACAT CAAATGGCGA GCCCTACGAC
ATGTATGGCA TGTCTGGGGC GCACAAGACC TTGCCTTTGC CAAGCTATGC TCGCGTCACT
AATTTAGATA ACAATAAGCA GGTCATTATT CGGATTAACG ATCGCGGCCC TTTCCATTCG
GACCGGATTT TGGACTTATC CTACGCCGCC GCTTATAAGC TGGGCATGCT AGGCACAGGT
ACCGCGCGAA TTAAGCTGGA TGTGATCTAT ATTGGCACTC AGGCCGCGAC ACAGTCCGCC
ATCGCCAGTA TTCAATCCTC AGGCAATCAC TACATACAAT TGGTGGCTTC GAAGGATCAG
CATAGGCTGA ACAAAATGGC GAAGGATCTG GAGAAGAAAT ATCAGGTCAA GACCCGTGTA
CAACCGGCAA ACAATATGTA TAGACTACAG CTCGGTCCAA TTGGCCAAAC CGAACTAGCC
GACCGATTAC TCAATAAAGT GAAACAAGAC GGTTACCCCG AAGGCTATAT GGTTTTGGAG
TAG
 
Protein sequence
MTLRNNLLQL LMLGCCFALA ACSSSNSGSA SEKNKNMDPN KGRYALKNDK MPINPPNVDH 
VPNATPKYEP YSRRGNKPYT VYGESYTVLD SGQGFSETGR ASWYGEKFHG YETSNGEPYD
MYGMSGAHKT LPLPSYARVT NLDNNKQVII RINDRGPFHS DRILDLSYAA AYKLGMLGTG
TARIKLDVIY IGTQAATQSA IASIQSSGNH YIQLVASKDQ HRLNKMAKDL EKKYQVKTRV
QPANNMYRLQ LGPIGQTELA DRLLNKVKQD GYPEGYMVLE