| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0979 |
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| Symbol | |
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| ID | 4251630 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1145944 |
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| End bp | 1148118 |
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| Gene Length | 2175 bp |
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| Protein Length | 724 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117543 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_733116 |
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| Protein GI | 113969323 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.16439 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTTTA TTTTTGGAGT GAAAATGGCT GTTTATGTGA GCCACAAGCG CTCGGCATTA
GTGCTGGGCG TGGCGTTATT GGCGTTGGAT GCGAGTGTTC CCCTATTGGC CGCCGAGGCT
GTGCCAACTG ATACCGCCGG ACTTAATGAC GACGATATCG AGCGTTTAAG CATTCATTAT
CGTCAGGCCT ACCGCGGCAA TGTGCCGGCG ACTGAGTTAC CCCAAGCGAT TACTGTGCTG
GATGAGCAAC TGATTAAAGA TACTGGGCTG ACGCGTTTTC AAGACTTATT GGATTACTCC
GCCAGTGTCG CGCGGCAAAA CAACGGTGGT GGGCTGTGGG ATAGTTTTTC GTTACGGGGC
TTTCCTGGGA ATGAAAACAT GCCATCGGGC TATTTAATCA ATGGTTTTAA TGGTGGCCGA
GGATTCAGTG GTCATAGAGA TCTATCGAAC GTGGCCTATG TGGAAATCCT CAAAGGCCCG
GGTTCGGCGC TTTATGGACG CTCGGAGCCG GGTGGCACAG TGAATATTGT GACTAAAAAG
CCGCAGTACG AGGCGCAAGG CTATTTAAAA GCGTCTGCGG GGAGTTTCGA TCAATATCGG
TTGGAAGGGG ATTTTACCTC GGGGCTGACC GATACCTTGG CCTTTAGGAT CAATGGCGCT
TGGCAGGAGC ATGACAGTTT TCGCGATTAC GTGTTTAGCG ATAAAAAGAT CGTCACGCCA
TCGCTGCGCT GGCAACTGTC CGATAAGTCA TCGCTCCTGT ATGAGGTTGA ATATCTTAAG
CAAGAACAGT TATTTGACCG TGGTGTAGTG GTACTCAATA ACGACTTTAA TACCGTGCCC
CGTTCGCGTT ACTTGGGCGA GCCCAACGAT GGGCCAACTA AAGTGGATGC GACTGGGCAT
CAACTTACCT ATGAGTATGA ATTAAATGAG GATTGGTCGC TTACCGCGGG TTATAACTAT
CGCGATTCGA GTCTGAATGG CTACTCATCG GATGCAGAAT TAGCAAAGGG ACGTCAATCC
TTATATGACG ATGGCCGTAC TCTGACGCGG CAACATCGCT ATCGAGATTA CGCCTCAGAG
GATCATTCAG TACGTGCCGA ACTCAGTGGC CAGTTTGATA CCGGCAGCAT AAGACACAAT
CTGCTGCTCG GGACGGATGC CTATCATTAT CGACTAAAAA CGGGACTCTA CCGTTATCGA
GGCCAGAAGG GCGCCTATGC CATCGATATT TTTACCCCCC AATATGGCGC GGCTCAGCCA
GAGGTCAGTC TGCTGTATGA AAACCGAGAG ACTCAAGATG CCTGGGGCGC CTATTTACAG
GATCAATTGG AGTTAACCGA GCACTGGAAA CTGCATTTAG GGTTAAGGTT TGACCGTTAT
TCCCAAGAAA TCGCAGAGCA GGTCAACGCG AGTCTGTCGG ATCAAAGCGA TAACAGAGTC
AGTCCGAAAG TCGGATTAGT GTATCAATGG TCTGAGGCCT TAAGTGTTTA CGGCTCCTAT
TCGGAAGGAT TCTTACCGCT TTCAGGCACT GATTATGCGG GTAATCCCTT CGAGCCAGAG
GAGAGCAAAT CCGTCGAGTT AGGGGTTAAG TTCAACAGCA CTTGGTTTGA GCTACCCGTC
AATGGCAGTT TGGCTTGGTT TGATGCGCAA AAGAGCAATA TCTTGACCTC AGATCCCGTC
AATGTCGGCT TTTCGGCGAC CCTTGGTGAA GCCAAGAGCA CGGGGATTGA ATTGGATATC
GCGGCTGAAT TGACCGAGAG CTTACAAGCG ACCTTGTCCT ATGCCTACCT GAATACCCGC
ACGGCGAACG ACAGTCTGAA TCTAGATTGG GGCGTGTTAA TTCCGGCGGG AAGTCCGCTG
GTCAATGTGC CAAAACACAC GGGCAGTATC ATTCTCAAAC AGGACTTAAA TGATCTATCT
ATCGACGGTC ATTTAGGGCT GAGTTGGCGT TATGTGGACT CTCGCTTGGG CGATTCGGCC
GATCCGAGTT TTCAATTACC GAGTTATCAG TTGCTTGGAA TGTTCTTCAC TACTCGGCTT
GGCGAAAACC TAAGTCTTGC GCTCAATGTC GATAACCTGC TGGATGAGCA TTATATCGCC
AGCAGTTATT CGGCGCTGTG GGCCGTGCCG GGTGAGCCAC GTAACGTTAA AGTGAGTGTT
AGCTATGAAT TCTAA
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| Protein sequence | MLFIFGVKMA VYVSHKRSAL VLGVALLALD ASVPLLAAEA VPTDTAGLND DDIERLSIHY
RQAYRGNVPA TELPQAITVL DEQLIKDTGL TRFQDLLDYS ASVARQNNGG GLWDSFSLRG
FPGNENMPSG YLINGFNGGR GFSGHRDLSN VAYVEILKGP GSALYGRSEP GGTVNIVTKK
PQYEAQGYLK ASAGSFDQYR LEGDFTSGLT DTLAFRINGA WQEHDSFRDY VFSDKKIVTP
SLRWQLSDKS SLLYEVEYLK QEQLFDRGVV VLNNDFNTVP RSRYLGEPND GPTKVDATGH
QLTYEYELNE DWSLTAGYNY RDSSLNGYSS DAELAKGRQS LYDDGRTLTR QHRYRDYASE
DHSVRAELSG QFDTGSIRHN LLLGTDAYHY RLKTGLYRYR GQKGAYAIDI FTPQYGAAQP
EVSLLYENRE TQDAWGAYLQ DQLELTEHWK LHLGLRFDRY SQEIAEQVNA SLSDQSDNRV
SPKVGLVYQW SEALSVYGSY SEGFLPLSGT DYAGNPFEPE ESKSVELGVK FNSTWFELPV
NGSLAWFDAQ KSNILTSDPV NVGFSATLGE AKSTGIELDI AAELTESLQA TLSYAYLNTR
TANDSLNLDW GVLIPAGSPL VNVPKHTGSI ILKQDLNDLS IDGHLGLSWR YVDSRLGDSA
DPSFQLPSYQ LLGMFFTTRL GENLSLALNV DNLLDEHYIA SSYSALWAVP GEPRNVKVSV
SYEF
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