| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0976 |
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| Symbol | |
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| ID | 4251627 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1143142 |
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| End bp | 1144041 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638117539 |
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| Product | 3'-5' exonuclease |
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| Protein accession | YP_733113 |
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| Protein GI | 113969320 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0707907 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATTAA TGCGTTATTG CCTTTCTCCC AATAAGTTGG CTTGGCTGCG TCAGGAATTA
GGCGAACATG CCGACGAGCT TATCGCGGCG ATGGATAAAG CTGGGAGTCA ATATCTGGCT
GGGTTAGCCG AGTCCCAAGC GGGGGACTTA TCGGCAGCCG ATTCGCAACT TAAGTTCCAA
TGGTTTCAGC AAAAAATCGC CTTAACGACG CGATTAACCG ATGCCGAGCT GGCAAACCTC
GTACCACTGT CGCTGGTGGA TATAAAGGGC GAAATGCGGG ACGAAATGCG GGTGGAATTA
GTCACGCCCG ATACGCTTGC CACCGCATTA CAACAACTTA GCAGTGAGTC TGTGCTGGGG
TTTGATACCG AAACGCGGGC AAGCTTTGAG CCGGGTGTTC AACATCCCTT GAGCTTAGTG
CAATTGGCGA CCTCAGATAC CTGCTATTTA TTTCAGCGGG CGGTATTGGG TGAGAGGCTC
GCCGAGCTCA AACCTTTGCT CGAAAATGAG CGGATCCTCA AAGTGGGGAT TGGATTAAGG
GGCGATGGCC AAGCACTGAA ACGGGATTGG GATATTCAGG TCTCCCCTCG ACTCGATTTG
AATTGGGCGA TGGCGCAGCT CGGCGCTGGG AAGGAAATGG GGACGCGGCA ATTGGTGGCG
GCATTACTGC ATAAACGTAT CGATAAACCT AAAAAAATTA CCCTCTCGAA TTGGCAACAG
GTGCCTTTAT CCCAAGCGCA AATTCAGTAC GCCGCCCTCG ATACATTGGC GGCAAACCTC
TGTTTTTGGC AGTTAATCGA CAAGCTGCAA GGTTTTTATG GCAAAACGAC CGTCGGTAAT
AAACCCTTAT TGCCGCCGAG TTTAGCCGCA CGACTCGCGA GCTATTTTCA TCCAGCTTAA
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| Protein sequence | MQLMRYCLSP NKLAWLRQEL GEHADELIAA MDKAGSQYLA GLAESQAGDL SAADSQLKFQ
WFQQKIALTT RLTDAELANL VPLSLVDIKG EMRDEMRVEL VTPDTLATAL QQLSSESVLG
FDTETRASFE PGVQHPLSLV QLATSDTCYL FQRAVLGERL AELKPLLENE RILKVGIGLR
GDGQALKRDW DIQVSPRLDL NWAMAQLGAG KEMGTRQLVA ALLHKRIDKP KKITLSNWQQ
VPLSQAQIQY AALDTLAANL CFWQLIDKLQ GFYGKTTVGN KPLLPPSLAA RLASYFHPA
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