| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0942 |
|---|
| Symbol | |
|---|
| ID | 4251873 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1099909 |
|---|
| End bp | 1101033 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638117505 |
|---|
| Product | ApbE family lipoprotein |
|---|
| Protein accession | YP_733079 |
|---|
| Protein GI | 113969286 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1477] Membrane-associated lipoprotein involved in thiamine biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.324541 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAGTA AAGCTCTCAT CTGCAACTTT TGTATTAAAG GGCATCCAAA AGAGTTGTTA
GTCACTATGT TTAAAACCCT AGCGTTAAAA ACCCCCGTGT TAAAAACCTC AGTGTTAAAG
CATTCAGTGA ACTGGCTGGT CCTTGTAGGT CTAGCCTTTT TTATTTCAGC CTGTAGCAAA
CAGGATGAGG TTATCTCCCT CGCGGGCAGC ACAATGGGCA CGACCTACCA CATTAAAGTG
GTTCCCAATG AGCAAATGCC AACGGCCCAG CTGTTGCAGG CCGAAATTGA CTTAGCCCTA
GAGCAAGTCA ATAACCAGAT GTCGACTTAT CGACCCAATT CAGAACTGTC TCGTTTCAAT
CAGTTACCGC TCGAGCAAAG CGTTGAAGTG TCGCCGGATA CCATTAAAGT GGTTAAAGAA
GGCATGCGTT TGTATAACGT GACGGACAAA GCCTTAGACA TTACCTTAGG GCCGCTGGTG
AACCTATGGG GATTTGGCCC CGATAAACGC CCAACCAAAG TGCCAACTCA AGCCGATATC
GATGCGGCTA AAGCCAAAAC GGGTATCAGT GAGCTTTCTA TCGAAGGCAA TCGCTTAAGC
AAGCACAATG CGCATTTATA TGTGGACTTG TCTTCAATCG CCAAAGGTTT TGGCGTGGAC
AAAGTGGCCT CGATTTTAGA TAAGTACCAT GCAAGCGGTT ACTTAGTCGA AATTGGTGGC
GAGCTGAGCA TTAAAGGCAC TAAAGGCGAT GGTAGCTCAT GGCGCGTCGC GATAGAGAAA
CCGACCGATG ATGGCATGGC GGTGCAACAG GTGATTGAGC CTGGCACTAT GGCGATGGCA
ACGTCGGGGG ATTATCGCAA TTATTATGAG GAAGAAGGTC AGCGTTTTAC TCATATAATT
GATCCACGTA CCGGTTTACC TATTAATCAT AAGCTAGCAT CTGTGACCGT TTTGCATAAA
GAATGTATGA CGGCCGATGG TTTTGCGACG GCGATGATGG TTTTAGGCAC AGAAGCGTCA
TTGGAGCTTG CCAAGAAAGA ACACTTGGCG ATAATGCTAA TAGAAAAGCA AGGCGAAGGA
TTTAAAGTCT ACTACAGTGA CGCCTTCAAG CCTTTCCTTA AGTAG
|
|---|
| Protein sequence | MWSKALICNF CIKGHPKELL VTMFKTLALK TPVLKTSVLK HSVNWLVLVG LAFFISACSK
QDEVISLAGS TMGTTYHIKV VPNEQMPTAQ LLQAEIDLAL EQVNNQMSTY RPNSELSRFN
QLPLEQSVEV SPDTIKVVKE GMRLYNVTDK ALDITLGPLV NLWGFGPDKR PTKVPTQADI
DAAKAKTGIS ELSIEGNRLS KHNAHLYVDL SSIAKGFGVD KVASILDKYH ASGYLVEIGG
ELSIKGTKGD GSSWRVAIEK PTDDGMAVQQ VIEPGTMAMA TSGDYRNYYE EEGQRFTHII
DPRTGLPINH KLASVTVLHK ECMTADGFAT AMMVLGTEAS LELAKKEHLA IMLIEKQGEG
FKVYYSDAFK PFLK
|
|---|
| |