| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0935 |
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| Symbol | |
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| ID | 4251866 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 1091557 |
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| End bp | 1093608 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638117498 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_733072 |
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| Protein GI | 113969279 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000201333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGTC GCTACTTTGT GATGTCGCTG ACCGCGCTAG CGGTTTCCTG TGTTTACACT
CATCCCCTTA ATGCAAACCC TCTCTACTCT CAGACGCTCG ATTTGATTGA ACTCAATAAC
CAGTATCATT CCGGTGATGA TGGGATGCAG TTGAGTTACT TAAATAGTTT AACCCTACTA
CGGGCAGACC ACAGTGGTAA CGGCGCGAAT ATCAGTATGC GTTCCGCCAG CCAAGGCGTG
GCTGTGATGC AAGATAGAGT GTACTTCTCA CCCGCACCAT ATTCGGCGCC GCAGTTACAA
CTATTGCCCA ATCTTTTGCT GCAGCAAAAT GTGACTAGTA CACCACTGGC GAATATGACG
GTGGGCGGAC AAGGGGCCTT TGGTGTCGTG AACTATCAAA GCCTTGAAAT CACTGATCGA
CCTCAGTCGG GCAGCTTTAA GGTTGAGGGG GCAACGGATT CCGACTTTAG TGCTGGCATG
ACTTGGGGCG TAAAACAAAA AGAGTACGAT GCCTTATTCG CGGCGAATTA TCTTCAAGAA
CAAGGTGATG CGAATTTTTT CAACGGCAGT GATGCCGACA GAAAGAAAAC CGACATACTG
TTTAAGGTCA ACGCCGCCAG TTTGCTTGGA GCGCGAAGTC CGCAGCAAAC GGAATTTACC
TATCAATTTA TCGACGATGA TAGTTATCGC TCACAACTTG GCAGTACTTT AGCTGACTGG
CAACAGGATC CCTTACTCTT ATATTCGGCA ACGGCACAAG ATAAACTCCA GGGACGGCAG
CACAAGTATC AGCTATCACA CCAAGTGGAT TTAGCTGGCA GTAAAGTGAT CAGCGACTTT
TACTATCAAT CCTATTCACA ACAATTGAAT CAGCTTGGTT TATTTAATGG GCAAGAGATT
AACGCAGCAA CCCTTGCAGA TATTGCTGAC TTTGATCATG CGCCAACCGC GGATGTTATT
GATGTCGCTC TGCTCGTCCA AGACAACGAT TACAGTGCCT TTGGCGCCCA GACCCAAGCC
ATAAACCAAT ACGGTGAACA TCAAATTATT TACAGTGCTC GCTATCATAC GGATAAGGCC
GAGATGCGCT TTGGTGAGCA GACGGCGTTG TGGCAAGCGG ATAGAAGTCT TGTCTCTGAT
GACTCGGGTG CCATATTAGC ATACACCGAT GATGCCACCG CGCTGACATC GGCAATCGAT
TCGTTATTCC GCTGGCAAGG CATGCAAATC AAGTTAGGGC TTACTTACGA GCATGTGAGT
ATTAATCGTG AAGTGAAGCA AGCGTTTGCG GGGCTGGACG AAGCGGATTT CTCCGATAGT
GATTGGATGC CGCAGCTAGG TGTGCTCTAT GATGCGGGCG ATTGGCGTTT TAGTACCGAT
ATCCGTCGGG CCTGGACTGC AGCAAGCGCG GGAAATACCA CTCAAGAGGC TCAGGTGTCG
CTCCATTATC AAGTGAGTGC CCAATATGCG CGCGAAGGGA TAAAAGCGGA TTTACGGGCA
TATGTTCAAG AGTTCGATAA TCTGCATGTG GATTGCGATA GCTATTCGAT GTGCGCCGAT
GAACGCCTGT TAACTCAAGA GAATATTCCC GATGTGCTCA CCTACGGCGT AGAACTTGGC
CTTGGCTATC GCTGGGATCT GGGTGGGGTA GAGCTACCCT TAGGACTAAA TTATCAATAT
CTTAGCGCCG AGTATCAAAC CAGCACTTGC ACCGATGTCC AAGGCTGTGT TTTAGAGGGA
GATAGATTGG CTTGGTTACC CGAACATCAA TTGCAATTGA GTGCGGGAAT TAAATATGCC
CAATATCGAT TAAATCTTGA GGCGGCCTAT CAATCGGAGC GTGATTTCAG TCAGTTTGGC
AGTGAGCAAG AACGGATTTC GGGCCAATGG CGGGTCGATT TGGCGGCGAA TTATGATTTT
GATAAACACC ATAGGTTGTA TTTTAGGGTC GAAAATCTGC TCGATGAGTC CTTAGTCACC
ACAGCATCAA ATAGCGGAAT TCGGTCTGAA AATGGAAGGA TCAGCTATTT GGGTTATCAA
TGGCGTTTTT AA
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| Protein sequence | MSSRYFVMSL TALAVSCVYT HPLNANPLYS QTLDLIELNN QYHSGDDGMQ LSYLNSLTLL
RADHSGNGAN ISMRSASQGV AVMQDRVYFS PAPYSAPQLQ LLPNLLLQQN VTSTPLANMT
VGGQGAFGVV NYQSLEITDR PQSGSFKVEG ATDSDFSAGM TWGVKQKEYD ALFAANYLQE
QGDANFFNGS DADRKKTDIL FKVNAASLLG ARSPQQTEFT YQFIDDDSYR SQLGSTLADW
QQDPLLLYSA TAQDKLQGRQ HKYQLSHQVD LAGSKVISDF YYQSYSQQLN QLGLFNGQEI
NAATLADIAD FDHAPTADVI DVALLVQDND YSAFGAQTQA INQYGEHQII YSARYHTDKA
EMRFGEQTAL WQADRSLVSD DSGAILAYTD DATALTSAID SLFRWQGMQI KLGLTYEHVS
INREVKQAFA GLDEADFSDS DWMPQLGVLY DAGDWRFSTD IRRAWTAASA GNTTQEAQVS
LHYQVSAQYA REGIKADLRA YVQEFDNLHV DCDSYSMCAD ERLLTQENIP DVLTYGVELG
LGYRWDLGGV ELPLGLNYQY LSAEYQTSTC TDVQGCVLEG DRLAWLPEHQ LQLSAGIKYA
QYRLNLEAAY QSERDFSQFG SEQERISGQW RVDLAANYDF DKHHRLYFRV ENLLDESLVT
TASNSGIRSE NGRISYLGYQ WRF
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