Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0917 |
Symbol | |
ID | 4251848 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1070596 |
End bp | 1071321 |
Gene Length | 726 bp |
Protein Length | 241 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638117480 |
Product | pseudouridine synthase, Rsu |
Protein accession | YP_733054 |
Protein GI | 113969261 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.81174 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTCG CCAAATACCT TGCCCAATGC GGCATTAGTT CACGCCGTGA AGCCTGCCGC TTGATTGAGG CTGGACGCAT CAGCCTCAAT GGCAAGATAG CCAAGCATAC CGATGCCGTG CATGTCGATG CTGACGGCCT ATGCCTCGAT AGCCTCTGCT TAGATGAAAA GCCCATATCG GGCGTCGAAG CGCTTTCCTA TTGGCTCTTC AATAAAGCCG TGGGCACAGA TTGCCGTTTG TTAGACGCCG ATAAATCCAG TTTGCTACAT TTACTGCCGG CCACGCCAAG ACTCTACCCA GTGGGCAGAT TAGATAAGGA TTCCCGTGGC TTATTGCTGC TCACCAACGA TGGCGAACTC ACCCATAAAC TGATGCACCC TAGTTTTGCC CACAGTAAAA CTTACCATGT GCAACTCGAT AGCCCCTTCA ACGATGCCTT TATCGAGCAA ATGGCCTGCG GCGTGCAATA TAAAGAGGTG CGCAATAAAG AGGTGCGCAC ACTCCCCTGC CAAGTCACGC GGTTAAGTGA TGTGAGTTTT GAAATTGTGC TTACCCAAGG GTTAAATCGC CAAATTCGGC GCATGTCCAA CGCCTTAGGT TATAAGGTGA TTGACTTACA ACGCGTCGCG TTAATGACAT TAACGCTAGG CTCCTTAGCC GAAGGCGAAA TGCGCCCACT CAGCCCAGAG GAAGTTACAG CGCTTAAAGC CGCTGTGGCA ATTTAG
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Protein sequence | MRLAKYLAQC GISSRREACR LIEAGRISLN GKIAKHTDAV HVDADGLCLD SLCLDEKPIS GVEALSYWLF NKAVGTDCRL LDADKSSLLH LLPATPRLYP VGRLDKDSRG LLLLTNDGEL THKLMHPSFA HSKTYHVQLD SPFNDAFIEQ MACGVQYKEV RNKEVRTLPC QVTRLSDVSF EIVLTQGLNR QIRRMSNALG YKVIDLQRVA LMTLTLGSLA EGEMRPLSPE EVTALKAAVA I
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