Gene Shewmr4_0917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0917 
Symbol 
ID4251848 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1070596 
End bp1071321 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content51% 
IMG OID638117480 
Productpseudouridine synthase, Rsu 
Protein accessionYP_733054 
Protein GI113969261 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases 
TIGRFAM ID[TIGR00093] pseudouridine synthase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.81174 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCTCG CCAAATACCT TGCCCAATGC GGCATTAGTT CACGCCGTGA AGCCTGCCGC 
TTGATTGAGG CTGGACGCAT CAGCCTCAAT GGCAAGATAG CCAAGCATAC CGATGCCGTG
CATGTCGATG CTGACGGCCT ATGCCTCGAT AGCCTCTGCT TAGATGAAAA GCCCATATCG
GGCGTCGAAG CGCTTTCCTA TTGGCTCTTC AATAAAGCCG TGGGCACAGA TTGCCGTTTG
TTAGACGCCG ATAAATCCAG TTTGCTACAT TTACTGCCGG CCACGCCAAG ACTCTACCCA
GTGGGCAGAT TAGATAAGGA TTCCCGTGGC TTATTGCTGC TCACCAACGA TGGCGAACTC
ACCCATAAAC TGATGCACCC TAGTTTTGCC CACAGTAAAA CTTACCATGT GCAACTCGAT
AGCCCCTTCA ACGATGCCTT TATCGAGCAA ATGGCCTGCG GCGTGCAATA TAAAGAGGTG
CGCAATAAAG AGGTGCGCAC ACTCCCCTGC CAAGTCACGC GGTTAAGTGA TGTGAGTTTT
GAAATTGTGC TTACCCAAGG GTTAAATCGC CAAATTCGGC GCATGTCCAA CGCCTTAGGT
TATAAGGTGA TTGACTTACA ACGCGTCGCG TTAATGACAT TAACGCTAGG CTCCTTAGCC
GAAGGCGAAA TGCGCCCACT CAGCCCAGAG GAAGTTACAG CGCTTAAAGC CGCTGTGGCA
ATTTAG
 
Protein sequence
MRLAKYLAQC GISSRREACR LIEAGRISLN GKIAKHTDAV HVDADGLCLD SLCLDEKPIS 
GVEALSYWLF NKAVGTDCRL LDADKSSLLH LLPATPRLYP VGRLDKDSRG LLLLTNDGEL
THKLMHPSFA HSKTYHVQLD SPFNDAFIEQ MACGVQYKEV RNKEVRTLPC QVTRLSDVSF
EIVLTQGLNR QIRRMSNALG YKVIDLQRVA LMTLTLGSLA EGEMRPLSPE EVTALKAAVA
I