| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0906 |
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| Symbol | pdxA |
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| ID | 4251697 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 1055718 |
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| End bp | 1056704 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117469 |
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| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
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| Protein accession | YP_733043 |
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| Protein GI | 113969250 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
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| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0940937 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.343226 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCACTA AACGTATTGC CGTTACCCCC GGAGAACCTG CGGGTATCGG CCCCGATTTA
GTCGTGCAAC TCGCTCAGCA GGCTTGGCCT GCTGAGTTAG TCGTTTGTGC GGATCCCGAA
TTATTAGCCA GCCGAGCTAA ACGACTCGGC CTGAATGTCA CGTTTCGCCC TTACTTGCCC
GAGCAATCGC CTAAACCGCA GGAAGCAGGC ACACTCACCA TTGCGCCTTT CAAACTGGTG
ACCGACGCCG TTTGTGGCCA ACTCGATGAG CAAAACAGTG CTTACGTGGT TGAAACCCTG
CGTTATGCGG GTGAGAAAAA CATGAGCGGC GAATTTGATG CCGTTGTCAC AGGCCCAGTC
CATAAAGGGA TCATCAACCA AGCGGGGATT TCCTTTAGCG GCCATACCGA GTTTTTTGCC
CATCAGGCCA ACTGCCCTGA TGTGGTCATG ATGTTAGCAA CCCAAGGTTT ACAGGTGGCA
CTGGTGACCA CCCATATCCC TCTGGCCTAT GTGGCAAAAG CCATTACGCG CCAGCGTTTG
CATCATATTA TCAAGATTTT ACACGCTGAC CTTATCAGCA AGTTTGCCAT TGCTTCCCCT
AAAATTTATG TCTGTGGTTT AAACCCACAC GCGGGTGAAG ACGGCCATCT TGGCCGGGAA
GAAATCGATG TGATTATTCC GGCACTGAAT GAACTGCGTG AAGAATATCA AATGAACATT
GTCGGCCCTC TGCCCGCCGA CACCCTGTTC CAACCTAAAT ATTTACAGGA CGCGGATGTC
GTGTTGGCCA TGTACCATGA CCAAGGCTTA CCCGTTCTAA AGTCACAGGG ATTTGGCAAA
TCGGTAAACA TTACCTTAGG TTTACCTTAT ATCCGTACCT CGGTTGACCA TGGTACGGCG
CTCGATCTTG CGGGAACTGG CAAAGCCGAT ATTGGCAGTT TTGTCTGCGC CTTGAATAAA
GCCATTGAGT TATCCTCAAA AAACTAA
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| Protein sequence | MTTKRIAVTP GEPAGIGPDL VVQLAQQAWP AELVVCADPE LLASRAKRLG LNVTFRPYLP
EQSPKPQEAG TLTIAPFKLV TDAVCGQLDE QNSAYVVETL RYAGEKNMSG EFDAVVTGPV
HKGIINQAGI SFSGHTEFFA HQANCPDVVM MLATQGLQVA LVTTHIPLAY VAKAITRQRL
HHIIKILHAD LISKFAIASP KIYVCGLNPH AGEDGHLGRE EIDVIIPALN ELREEYQMNI
VGPLPADTLF QPKYLQDADV VLAMYHDQGL PVLKSQGFGK SVNITLGLPY IRTSVDHGTA
LDLAGTGKAD IGSFVCALNK AIELSSKN
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