| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0890 |
|---|
| Symbol | |
|---|
| ID | 4251681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 1042744 |
|---|
| End bp | 1043358 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638117453 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_733027 |
|---|
| Protein GI | 113969234 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTTA GTACTTGGTT AGGACTATTG GCGATTTGTT GCTTGGGCGC TATGTCTCCC
GGGCCGAGTT TGGCCATGGT TGTGCGTCAT ACCTTGGGCG GTGGTCGCGG CAAAGGGATC
GTTTGCGCTT GGGCGCACTC GATTGGTATT GGTATTTATG CGTTAGTGAC GCTACTCGGA
CTAGCCGTTG TATTGAAAAA AGCGCCATTG ATTTTTAATG GGATCGCGAT TTTAGGCGCG
CTCTATCTCG CATGGATGGG GATCCAAGCA TTGCGCTCAA ACGGTGGTAT GCAGGCAAAA
CTTGCGGCGG GGGAGGCTAC GGATACGCTC ACTGCGGCGC GCGATGGTAT CGCAATTTCC
CTCTTCAATC CTAAGATTAT GTTGTTCTTT TTAGCGCTGT TTAGCCAGTT TGTGATGGTG
GCCGATAGCT TGACGGGTCA AGCACTTATC GTGCTAACGC CTTTGGTAGT TGATGGGCTT
TGGTACACCT TGATTGCCTT ACTGTTGTCC CATTCGAGTG TATTGCCTAA GTTACGGGAA
AAAGCGGGAC TTATTGATAA ACTTTCTGGT GTGGTACTGA TCCTGCTCGC GATACGCGTG
GTCTACACTC TCTGA
|
|---|
| Protein sequence | MSFSTWLGLL AICCLGAMSP GPSLAMVVRH TLGGGRGKGI VCAWAHSIGI GIYALVTLLG
LAVVLKKAPL IFNGIAILGA LYLAWMGIQA LRSNGGMQAK LAAGEATDTL TAARDGIAIS
LFNPKIMLFF LALFSQFVMV ADSLTGQALI VLTPLVVDGL WYTLIALLLS HSSVLPKLRE
KAGLIDKLSG VVLILLAIRV VYTL
|
|---|
| |