Gene Shewmr4_0887 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0887 
Symbol 
ID4251678 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1038382 
End bp1039848 
Gene Length1467 bp 
Protein Length488 aa 
Translation table11 
GC content51% 
IMG OID638117450 
ProductFis family transcriptional regulator 
Protein accessionYP_733024 
Protein GI113969231 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTCAA CACAGCCCGC TGCAATGCCC TTGGATAAAC ATTTTCTGCC AGAGAACCAG 
TTACTGCTCA ATGCCGTGGG AGAAGGCATT TATGGGTTTG ATTTAAATGG TAATGCCGTC
TTTATTAATC CCGCCGCCGA GCGCATGACG GGCTGGAAGA ATGAAGAATT ACTCGGCAAA
AATATCCATA ATTGCCATCA TCATAGCCAC GCGGATGGCA GTCATTATCC CCAAGAAGAT
TGTCCCATCT ACAACACCTT GAAGGATGGA ATAGCAAGGG AAATCACCCA CGATGTGTTT
TGGCGTAAAG ATGGCAGCAG CTTTCCAGTA CATTACAGCT CGACGCCCGT CTATCGGGAC
AACAAGCTAA TCGGTGTGGT CGCGATATTT CGCGACATCA GTATTCAGAA ACAAACCGAG
CAGTCGCTAC GTCAAGCTTT AGCGCAGGTT CAAGCCCTGT CGGAGCAACT TGCCAGCGAA
AATCACTATC TCCAAGCCGA GTTAGCCGAT AAGACCGGCG ATGTGGATAT TTCGGGCAGC
AGCGCGGTGA TCCGTCATAT GATCCAGCAA CTGCATATGG TGGCCAATAC TGACAGTACC
GTATTAATTT GTGGCGAAAA TGGCACAGGC AAAGAACTGG TTGCCCGCAA CTTACATCAA
CTGAGTCGCC GTAAAGATAA GCCCATGATC AGCGTTAACT GCGCGGCGTT TTCAGCCTCA
CTGTTAGAGA GTGAGTTGTT TGGCCATGAG AAAGGCGCCT TTACCGGCGC GACACAGCAG
CGCAAGGGCC GCTTCGAACT CGCCCATCAA GGCACACTGT TTCTCGATGA GGTGGCCGAA
TTAAGTTTGG AGGCGCAATC TAAGTTGCTG CGGGTGATCC AAGAGCAATC CTTCGAACGA
CTCGGCGGCA GTGAAACCAT TAAGGTCGAT ATTCGCTTAG TCGCCGCCAG TCACCATGAT
TTACTCAAGC GCGTTGAACA GGGTTTATTC AGGATGGATC TCTATTACCG CTTGAATGTC
TTCCCAATCC AAGTGCCGCC GCTGAGAGCA AGACTTGAGG ACATGCCCGA GCTTGTCAGC
CACATATTGC ATTCCCTAAA CCGCAAACTC GGTAAGAAAC TGCGCGGCGT GAGCCAAAAA
GGTCTGCAAA AACTGATGGC CTACAGCTGG CCGGGTAATG TGCGTGAATT GCAAAATATC
CTCGAGCGGG AGGCCATTTT ATCTCAAACG GATATTTTAC AAATCCATGC CATGCCCACG
AATCACCTGC AGACTCAAAC CGCGGCTTCA CCATTGCAAA CCTTGGCCGA GGCGGAAGCA
CAACACATAG AGCAAACATT AAAGCAGCTC AATTGGCGTA TTTCGGGCCC CAATGGTGCG
GCCAATGTGC TCGGCGTCCC GCCAAGTACA CTCAGATCGC GGATGAAGAA GCTCGGGATT
ACACGTCAAA CCCCTGCGGA AGAATAG
 
Protein sequence
MTSTQPAAMP LDKHFLPENQ LLLNAVGEGI YGFDLNGNAV FINPAAERMT GWKNEELLGK 
NIHNCHHHSH ADGSHYPQED CPIYNTLKDG IAREITHDVF WRKDGSSFPV HYSSTPVYRD
NKLIGVVAIF RDISIQKQTE QSLRQALAQV QALSEQLASE NHYLQAELAD KTGDVDISGS
SAVIRHMIQQ LHMVANTDST VLICGENGTG KELVARNLHQ LSRRKDKPMI SVNCAAFSAS
LLESELFGHE KGAFTGATQQ RKGRFELAHQ GTLFLDEVAE LSLEAQSKLL RVIQEQSFER
LGGSETIKVD IRLVAASHHD LLKRVEQGLF RMDLYYRLNV FPIQVPPLRA RLEDMPELVS
HILHSLNRKL GKKLRGVSQK GLQKLMAYSW PGNVRELQNI LEREAILSQT DILQIHAMPT
NHLQTQTAAS PLQTLAEAEA QHIEQTLKQL NWRISGPNGA ANVLGVPPST LRSRMKKLGI
TRQTPAEE