Gene Shewmr4_0879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0879 
Symbol 
ID4251670 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp1029269 
End bp1030744 
Gene Length1476 bp 
Protein Length491 aa 
Translation table11 
GC content51% 
IMG OID638117442 
ProductFAD dependent oxidoreductase 
Protein accessionYP_733016 
Protein GI113969223 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAGAGC GCGGATTTTG GTTCGACACT GAGCCTAAGT TAACTCAACG AGCCGTTTTA 
CCACCCTTAG AGCAGGATAT CAGCGCCGAT GTTGCCATTA TTGGTGCGGG GTATTCCGGG
CTTTGGACTG CCTATTATCT AAAGCTATAC CAGCCAAATC TGTCTGTGGT TATCCTTGAG
GCCGAACGCA TAGGCCAAGG TGCATCCGGT CGCAATGGTG GTTGGTTGAT GGGCAGTTTC
AGTGGTGATG TGGCCTACCT TAATCGGCTC GAGGGCGAGC AGCGCCTTAG CGCTAAAGCC
ATTATTCAAG CAACTATTTC TGAAGTGGCC ACAGTTTGCG CCAAGCATCA TATCGACTGT
GATTTACACC ATGGCGGTAA CTTGCGGGTG GCGGCGCGTT ATTCCGAGCA ATTAGCCAAT
ATTAAAGCCG AATTAGCGCA GTGGCGCGCA GAAGGTTTTG GTGAAGAAGA TATTCGTTGG
CTGGATAAGA CAGAGCTCGA TAAGCAAGTG TCTATGGCCG AGGGCCAAGC GGCACTTTTT
ACTCCCCATT GCGCGCGAAT ACATCCGGCG AAACTCGTCT GTGGTTTGGC TGACCTAGTG
CAACGCTTAG GGGTGAAGAT CTACGAGCAT ACTCTAGTAA ATCACATGGC GCATCTTGGT
GATGCACAAA CCCTATTGCA AACACCAAAG GGACGAGTTC GTGCGACGAT TGTGGTGCCC
GCGGTGGAAG GTTATCTGCG TCAGCTCAGT GGACTTGGGC GATTTACCTT ACCCGTGCAG
AGTTTACTTA TCGCCACTGA GCCGTTAACG GATGCCACAT GGGATGCAAT TGGCCTAGCC
AATCGCGCGA CCTTTAGTGA TGCCAGCCGC ATAGTGACTT ATGGCCAGCG TAGCCCTGAT
AATCGGCTGA TATTTGGTGC CCGTGGCGGC TATGGCTTTG GCGCGGAAAT ACGCACCGAA
TTTGGTTTTG ACCCTAAACT GTTTAACGGG AAATTTCCTG CAAATCAAAG CCCACCTCAG
TGTGATTTCG AGGGCGAATT TGGCTTTCGT TATCAATTAT TATTGGCGTT ATTTCCTCAA
CTTAACGGCG TGCAAATTAC CCATGGTTGG GGCGGAACGT TAGCCTTGGC GAGGCGCTTT
GCTCCCCATG CCATCTTTGA TCAAAGTCTG GGTTTAGGCC TGATTGGCGG CTATGGCGGG
GAAGGTGTCG GGGCGGCAAA CCTATTTGCC CGCACGCTGG TGGACTTGAT ATTAGGGCGT
GATACACAGC TTGCATCTAT GCCTTGGGCG TTTAATGCTC CAGTACAACA GGTATTAGCA
CCCTGGGAGC GCGAGCCTTT GCCTTGGCTC GCATACCATG GCATGAATAA GATTTTTGCG
TGGGAAGATA GGCTCTACAG TCAGCCAAAG AGTGCGGCTT GGCAAAAAGG TTTAGCTAAG
CGGTTCGCGA ATCGATTAGA AGGCTTAATG AGTTAA
 
Protein sequence
MKERGFWFDT EPKLTQRAVL PPLEQDISAD VAIIGAGYSG LWTAYYLKLY QPNLSVVILE 
AERIGQGASG RNGGWLMGSF SGDVAYLNRL EGEQRLSAKA IIQATISEVA TVCAKHHIDC
DLHHGGNLRV AARYSEQLAN IKAELAQWRA EGFGEEDIRW LDKTELDKQV SMAEGQAALF
TPHCARIHPA KLVCGLADLV QRLGVKIYEH TLVNHMAHLG DAQTLLQTPK GRVRATIVVP
AVEGYLRQLS GLGRFTLPVQ SLLIATEPLT DATWDAIGLA NRATFSDASR IVTYGQRSPD
NRLIFGARGG YGFGAEIRTE FGFDPKLFNG KFPANQSPPQ CDFEGEFGFR YQLLLALFPQ
LNGVQITHGW GGTLALARRF APHAIFDQSL GLGLIGGYGG EGVGAANLFA RTLVDLILGR
DTQLASMPWA FNAPVQQVLA PWEREPLPWL AYHGMNKIFA WEDRLYSQPK SAAWQKGLAK
RFANRLEGLM S