| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0845 |
|---|
| Symbol | |
|---|
| ID | 4251828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 999883 |
|---|
| End bp | 1001508 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638117408 |
|---|
| Product | cobyric acid synthase |
|---|
| Protein accession | YP_732982 |
|---|
| Protein GI | 113969189 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1492] Cobyric acid synthase |
|---|
| TIGRFAM ID | [TIGR00313] cobyric acid synthase CobQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTCAA ATAACGCCTC CAACTCCACT TCGGCCTTGT CGCAAAACCA GTTTCAAGGT
GTTGCAAGTC AAAGCGAAGC TCAGCATTCA GGTGCAAAAG TGCTTATGGT GCAGGGGACA
ACCTCGGATG CGGGCAAAAG TACGCTGGTG GCGGGAATAT GTCGATTGCT GGCCAGGCAG
GGCGTGAAGG TCGCGCCTTT TAAACCGCAG AATATGGCGC TCAATAGCGC AGTGACCATT
GATGGCGGCG AGATTGGCCG CGCGCAGGCA CTGCAAGCCG CAGCCTGTTT TCTCGCGCCG
CACACGGATT TTAATCCCAT CCTGCTTAAG CCAAGTTCGG ACACGGGCGC GCAGATCATA
GTCCACGGCA AAGCCTTAAC CACCCTAGAG GCCTCGGCCT TTTTCGGGGA AAAGTCTAAG
GATTATAAAG CCATGGCGCT AAATGCCGTG CTGGAATCCT TTGCGCGTTT AGGTCAGCAA
TACCAAACGA TTGTGGTTGA AGGGGCGGGA AGCCCTGCGG AAATCAATCT GCGTGAAGGG
GATATCGCCA ATATGGGCTT TGCCGAGGCG GTCGATTGCC CGGTGATCAT CATTGCCGAC
ATAGATAAAG GCGGGGTATT TGCCCATTTG GTGGGCACCT TAGCACTGCT GTCGCCCTCC
GAGCAGGCTA GGGTAAAAGG CTTTGTGATC AATCGCTTTC GTGGCGATAT TAGCCTGTTG
CAGTCTGGCC TCGATTGGCT CGAGGCCCAT ACGCAAAAGC CTGTGTTGGG GGTGTTGCCC
TATTTGCATG ATTTGCATTT AGACGCCGAG GATGCACTTA TCGAGTCGCC CACTAAGCAG
GCAAAAAGCC GTTTTAAGGT GCGGGTATTA GTGTATCCCC GCACCAGTAA TCACACGGAT
TTTGACCCAC TTAGGTTGCA CCCCGATATC GATTTTGATT ATGTGTCGCT CCAGACTCAG
GCCACAGCAC AGACGCAGGA GATTGCCGCC GATCTGCTGA TTTTACCCGG CAGTAAAAAT
GTCCGTGCGG ACTTGGCTTT TTTGCGCGAG CAGGGTTGGG ATAAGCAGAT TGCCAAGCAT
TTGCGCTACG GCGGTAAGCT ACTGGGGATC TGCGGCGGCT ATCAAATGTT GGGCGAACGC
ATTGCCGATC CCATGGGGAT CGAAGACACG CTCGGTGTGA GCCAAGGGCT CGGATATTTA
CCCATTACCA CCGAATTTAA AGCTGAAAAA CAGCTACGTA GGGTCACAGG CCATTTAGCA
CTGCAAGGGC AACAAGTGGA GGTGAAGGGC TATGAGATCC ACTGCGGTGA GTCCCAATAT
CTCACGTCCA GTGATGCCGC CAAGAGTGCG CCATTACGCT TGAAAAGTGA GAGTGCTTGC
GATCAACAGG CAGAAAAGTC TTTTGCCGAT GGCTGTTTAA GTGACGACGG GCAAGTGCTC
GGTAGCTATT TACATGGGCT ATTCGACAGC CCTGAGGCCT GTCAGCTAGT CCTTAATTGG
GCGGGGTTGG AAAATGCTCA AACGATTGAT ATCAATGAAA TTCGTGAGCA ACAGCTGGAT
CGTTTGGCCG ATGTATTAGC CGAGCATCTC GATATGCAAA AACTTGCGTC CATTATAAAT
GCATAA
|
|---|
| Protein sequence | MNSNNASNST SALSQNQFQG VASQSEAQHS GAKVLMVQGT TSDAGKSTLV AGICRLLARQ
GVKVAPFKPQ NMALNSAVTI DGGEIGRAQA LQAAACFLAP HTDFNPILLK PSSDTGAQII
VHGKALTTLE ASAFFGEKSK DYKAMALNAV LESFARLGQQ YQTIVVEGAG SPAEINLREG
DIANMGFAEA VDCPVIIIAD IDKGGVFAHL VGTLALLSPS EQARVKGFVI NRFRGDISLL
QSGLDWLEAH TQKPVLGVLP YLHDLHLDAE DALIESPTKQ AKSRFKVRVL VYPRTSNHTD
FDPLRLHPDI DFDYVSLQTQ ATAQTQEIAA DLLILPGSKN VRADLAFLRE QGWDKQIAKH
LRYGGKLLGI CGGYQMLGER IADPMGIEDT LGVSQGLGYL PITTEFKAEK QLRRVTGHLA
LQGQQVEVKG YEIHCGESQY LTSSDAAKSA PLRLKSESAC DQQAEKSFAD GCLSDDGQVL
GSYLHGLFDS PEACQLVLNW AGLENAQTID INEIREQQLD RLADVLAEHL DMQKLASIIN
A
|
|---|
| |