| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0842 |
|---|
| Symbol | cobT |
|---|
| ID | 4251982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 997259 |
|---|
| End bp | 998311 |
|---|
| Gene Length | 1053 bp |
|---|
| Protein Length | 350 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638117405 |
|---|
| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| Protein accession | YP_732979 |
|---|
| Protein GI | 113969186 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCAAT CTACCCTGTT ATTTCAAATC GAGCCTGCGA GTCGAGCGCA GGATCAGTTT
ATTCAACAAA AGATCGATCT GAAGACTAAG CCGCCGGGCG CTCTGGGGTT GTTAGAACCC
TTGGCGCTGC AAATTGCCCG CATTCAAGGG CCTAAGCAAT TAGAGATAGT GAACCCAACC
ATGTTGGTGT TTGCTGGGGA TCATGGGATT GCCGCCGAAG GCGTGTCGAT AGCCCCGAGC
GAAGTCACGC GGCAAATGGT GCAAAACTTT GCCCATGGCG GCGCGGCTAT CAATGTGTTT
TGTCGCCAAC TAGGCTTCAA TCTCGAAGTG ATTGATTGCG GTATTTTAAC CCCGGTTGAG
GGTGTCGAAG GCATTATAGA CCAACGCCTT GGCGCCGGCA CTGGCGCAAT TCACTTAGAG
CCAGCGATGA GTTTAGCTTG TGTGGACAAG GGCTTTGCCA TGGCGCAGGC GTTAATCGAG
CGCCACCACC AAGCGGGTTG TAACTTGGTC GCCTTTGGCG AGATGGGCAT AGGCAACACC
TCTTCCGCTG CGGCGATTAT GGCGGCCATC ATGCAACTCG ATGTGGCCGA CTGTGTTGGC
CGTGGCACGG GGATCAGTAG CGAAACCTTA GAGCGTAAAC AGATGCTTAT CGAACTCGCA
CTGCTGTTAC ATCAGAGTGC GATGACAGGG CCAAAGCAAG TGCTGGCCTG TTTGGGCGGC
TTTGAAATTG TGCAAATGAC GGGGGCCATG CTCGCCGCCG CCGAGCGCAA GATGCTGGTC
GTGGTGGATG GTTTTATTGC AACCGCGGCG GCTTTGGTTG CCGTGACTAT CAATGCCCAT
GTGCGGGATT ATTTGATTTT TGCCCACCGC TCCGAGGAGC AAGGTCATCA GCGGATGTTG
GAACATTTAA AGGCTAAACC ATTGTTATCT TTGGGGCTGA GATTAGGCGA AGGCACGGGC
GCTGCCTTGG CATTACCGTT AATTCAAGCC GCAGTAAATT TTTACAATCA AATGGCGAGT
TTTAGTGATG CCGGGATTGA GGCTGTTGTA TGA
|
|---|
| Protein sequence | MSQSTLLFQI EPASRAQDQF IQQKIDLKTK PPGALGLLEP LALQIARIQG PKQLEIVNPT
MLVFAGDHGI AAEGVSIAPS EVTRQMVQNF AHGGAAINVF CRQLGFNLEV IDCGILTPVE
GVEGIIDQRL GAGTGAIHLE PAMSLACVDK GFAMAQALIE RHHQAGCNLV AFGEMGIGNT
SSAAAIMAAI MQLDVADCVG RGTGISSETL ERKQMLIELA LLLHQSAMTG PKQVLACLGG
FEIVQMTGAM LAAAERKMLV VVDGFIATAA ALVAVTINAH VRDYLIFAHR SEEQGHQRML
EHLKAKPLLS LGLRLGEGTG AALALPLIQA AVNFYNQMAS FSDAGIEAVV
|
|---|
| |