| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0817 |
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| Symbol | rumB |
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| ID | 4250749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 951534 |
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| End bp | 952688 |
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| Gene Length | 1155 bp |
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| Protein Length | 384 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638117380 |
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| Product | 23S rRNA methyluridine methyltransferase |
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| Protein accession | YP_732954 |
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| Protein GI | 113969161 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02085] 23S rRNA (uracil-5-)-methyltransferase RumB |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00000520531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | GTGAGTACAT TAGTACAATG TGGGTATTTT GAACGAGGCC AATGCCAATC CTGTCGCCAT
ATTAAGCTCC CTATGGCGCA GCAACTAGCG GCCAAAACCC AAGAATTGCA GCAATTGTTA
GCGCCTTTTG TCGATAACGC CGAACCTCAG TTTTTACCTC CGGTTGTGGG TGACAGCAGC
GGTTTTCGTA ACAAGGCGAA AATGGTCGCC TTGGGCGCGG CCCATGCCCC TGTACTGGGG
ATTGTCAGCC CCAGCGGCGA GGCGGTGAGT CTGTGTGACT GTCTGTTGTA TCCTGCTGAT
ATGCAAGCCT TACTCCACCG TTTAGAGCGC TTTGTGCAGC AGGCGGGTAT TCCGCCTTAC
CGTGTCGATA AGGCCAAGGG CGAGCTTAAA TTTATCCTAC TGACGCGCAG CCAAGTGCGC
GGCGAGTATA TGCTACGTTT CGTGCTGCGC TCGCGGGATG CCATTGCCCG TATCGAACGT
GAATTACCGG CGCTGATGGC CGAATATCCG CAGATCAAAG TCGTCTCAGT CAATTTGCAA
CCTGTTCATA TGGCTATCTT GGAAGGTGAG GAGGAGATTT TCCTGACCGA AAACACTCGC
CTCGAAGAGC GCTTTAACGA TGTGCCCTTG TTTATTCGCC CCAAGAGCTT TTTTCAAACC
AACCCGCAGG TGGCGGCAAA GCTGTATCAA ACCGCCCGTG AGTGGGTGGC CGACTTCGCA
CCAGCTTCCC TTTGGGACTT ATTTTGTGGT GTGGGTGGCT TTGGTTTGCA CTGTGCAGCT
AAAGATATCC CATTGACAGG GATTGAAATT GAAGCCGAAG CCATTGCCTG CGCTAAGATG
TCGGCGCAGT TGATGGGGCT GGATAAGGTG CAGTTTATGG CGCTCGACTC CACTGACTTT
GCCAAGGGCG ATGCGGCGCA AACTAAGCCC GAGTTGATTA TTGTCAACCC GCCGCGCCGT
GGGATCGGAG AGTCTCTGTG CCATTCCTTA AGTGAGTTTG CACCTAAGGC GATTTTGTAT
TCCAGCTGCA ATCCTAAAAC CTTAGCCAAA GATCTCGGCC ATATTCGTGG CTATCGGTTA
ACTAAGGTGC AGTTGTTCGA TCTCTTCCCC CACTCGGATC ATTTCGAAGT ATTAGCCTTA
TTAGTGAAAG ACTAA
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| Protein sequence | MSTLVQCGYF ERGQCQSCRH IKLPMAQQLA AKTQELQQLL APFVDNAEPQ FLPPVVGDSS
GFRNKAKMVA LGAAHAPVLG IVSPSGEAVS LCDCLLYPAD MQALLHRLER FVQQAGIPPY
RVDKAKGELK FILLTRSQVR GEYMLRFVLR SRDAIARIER ELPALMAEYP QIKVVSVNLQ
PVHMAILEGE EEIFLTENTR LEERFNDVPL FIRPKSFFQT NPQVAAKLYQ TAREWVADFA
PASLWDLFCG VGGFGLHCAA KDIPLTGIEI EAEAIACAKM SAQLMGLDKV QFMALDSTDF
AKGDAAQTKP ELIIVNPPRR GIGESLCHSL SEFAPKAILY SSCNPKTLAK DLGHIRGYRL
TKVQLFDLFP HSDHFEVLAL LVKD
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