| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0791 |
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| Symbol | |
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| ID | 4250635 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 922705 |
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| End bp | 926061 |
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| Gene Length | 3357 bp |
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| Protein Length | 1118 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117354 |
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| Product | multi-sensor hybrid histidine kinase |
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| Protein accession | YP_732928 |
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| Protein GI | 113969135 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG3300] MHYT domain (predicted integral membrane sensor domain) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCTTAA AATATATGGC TTTTGATTGG TTTTCGCAGT TTTTTATTTC TTCCCAAGAC
AGCCTCTTGC TGAATGTCTA TTACAATCCT CTGTTAGTGA CAATCTCTAT TCTGATTGCG
ATTTTTTCGG CTTTTATGGC CTTTCAGGTC ACGACCCAAG CGGTGCTCAG CCAATCGAAA
TCACGCCAGC AGATCATGTT GCTGACGGGA AGCGTCGTCC TTGGCGGTGG TGTCTGGTCG
ATGCATTTTA TTGGCATGTT GGCCTTCGAT TTGTGTTCGC CCGTGACCTA TGATTTCGGG
CTTACTGCCC TATCCTTGTT ACCCAGCATA GGTGCTTCAT GGGTGGCGTT GAACTTGCTA
TCCAAGCCGA GTTTTAAGTT TTCCCAAGTG CTGATTAGCG GCATCTTAGT GGGGGCGGGG
ATAGGGACTA TGCATTATGT GGGCATGGCG GCCATGGATA TGGCGCCATT ACTGCGATAC
GACCCGTGGA TTTTTGCGCT GTCGATTGTG GTTGCCGTGC TACTGGCCAT TATTGCACTT
TGGGTTCGCA CCGGACTGAA TCAGCTTATC GCATCCAATA TGAGTGCCAT TACGAGCAAT
TTTATTGCCA GTATCGTCAT GGGGCTGGCG ATATCGGGCA TGCATTACAC TGGCATGGCG
GCGGCACGTT TTGTTAAACC TGAAGGACTT GAGCTTAGCG AGCAGAGCTC GGAAATTTCA
TTCTATCTGG CGCTCGGCGT ATCGGTTACT ACCGTTATCA TCATCTGTTT AGTGCTGATC
GTGAATGTGA TTTTTAAATA TAAAGACTTG TCTTTGCTCG CAAAATCCAA TGAAGACCGC
ATGCGCGCCA TGATGAACAC TGCCGTTGAT GGCATTATTA CCATCGATGG ACAAGGCATC
ATAGTCAATG TTAACAAAGC GGTGACTACC ATCTTAGGTT GGTCACCCGC CGAGTTACTG
GGCGAGAATG TGAAAAAAAT CGTGCCTGAG TCGATTCGCC CACATCACGA TGGCTATTTA
GCTCGGTATA TTAACACCCG TGAAGCACAG ATTATTGGCA CAGGCCGTGA GGTTGAGGCG
CAGCATAAAG CGGGGCATTC GGTGCCAGTG CGCCTCAGCA TAGGTCATGT GATGCAGGGC
AAAGCCCATT ACTTTGTTGG GTTTCTTTCC GATCTCAGCC TGCGTAATGA GATGGAACAA
GAGCTTAAAA ACAATGAGGC AAAGTTTCGC TCGCTGATCA CCAATATTCC AGGCATTGCC
TACCGCTGTA AAAGTACTGA GGGCTGGCCC ATGGTGTTTA TTAGTGAAGC CGTGCTGAAT
ATCACCGGCT ATCCCGCCGA AGATTTTGAG CTTCCTCATC CTAAACGTTT CTTCTCGGAT
CTCTATTATC CCGATGATAT AGAATCCATT TATGCACAGG CTCAGCCGCC GACCTTTTCG
ATGGAATATC GCATCATACG CGCAGACGGC GAAGTGCGTT GGCTGTTCGA GCATGGTAAT
TACATCCTAG ATGAAACCAG CAATGAGGTA TGGATTGACG GTTTCTTAAT GGATATCACC
GAGCGTAAGG TGATGGAGCA GGATCTAGTA ACAGCCAAGA ACAATGCCGA GCAGGCGGCT
GCGGCCCGTG CTGCCTTCTT GGCCAATATG AGCCATGAGA TCCGCACGCC TATGAATGCC
ATCATAGGCT TTAGCGATAT TCTGTTGGAG TCGGTGTTAG ATACTGAGCA GCACAAACAG
CTCTCCACCA TCAATCGCTC CGCCAAATCC TTAATGCATT TACTCAACGA TGTGCTCGAC
AGCGCTAAGC TCGACAAGGG TAAATTAGAA TTAGAAAACC GAGTATTTTG CTTAACCGAT
GAAATCGATA CTGTGATTTC AACCCTGTGG TTGCAGGCGA AAAAACAGCG CTTATCCCTC
GAGGTCGATA TTGCTCCCTC TATGGCGGCG AACTTTATCG GCTCACCCGA GCGTATTCGC
CAAGTGTTGA TCAATCTGAT AGGTAATGCC GTTAAGTTTA CCTGTGAAGG CAAGGTCACG
GTCAGTGTCT TCCCGCAAAA CGACAATCTG GTTACCTTCG AGATTATCGA TACAGGTATC
GGGATGACAC CCGAGCAGCT TAATCGGGTA TTTGAGGCAT TTGCTCAGGC GGATGCATCG
ATGAGCCGAA AATACGGCGG TACAGGCTTA GGAACCACAA TTAGCAAACA GTTAGTTGAG
CTGATGGGCG GTCAGCTTGA GGCTGAGAGT ACCTTAGGGC AAGGCAGTAC CTTCCGCTTT
ACCATTCCCT TGCAATCCAG CTCTGAACCG CTCGAGACCG AGCGCGCAGA CCATGGCTCA
TTACCGCCGC TGACCCTGTT AGTGGTCGAT GATATTCAGC AGAATATCGA TCTCCTGTCC
GTATGGTTGA CCCGTCAAGG GCATAAAGTG ATCACCGCCC GCGATGGTGA GCAGGCGCTG
CTGCGGATGC AAAAAGCCGA CATCGATATC ACGCTGATGG ACTTGCAAAT GCCTGTAATG
GATGGACTGA CGGCGGCGAA GATGCGCCGT GAGCAAGAGG CTGAGTCCCA GTTGCCCCAT
ATGCCAATCA TTGCGTTAAC CGCGAGCGTG CTTGAACAAG ATAAGAGCGC CGCAGAGCAA
GCTGGTATGG ATGGTTTTGC CAATAAACCC ATAGATTTTG CGCTGCTGAC ACGGGAAATT
GCCCGAGTAC TACAACTGAA TCCGCCGCAA GCCGAGGCTG AATCTTTGCA GCCTTTAGGC
AGTCAATTAG TCGATGAGGC CAAAGGCGTG AAGTTATGGG GCTCTAAACC ACAATTTATC
AAAGAGTTGA TGAAGTTTAT TGCCCAATGG CCAGAAAAAA GCCAAGCACT ACAGCAGGCC
ATTAGTGAGC AAGATACCGC AACGATTAAA CTCTTAAGCC ATAGTTTGAA AGGTGTCAGC
GGTAATTTGG GTCTATTGCA ATGGATGAGC TACTTTGCGC AGTTAGAAAA GTTAACCCAA
GCTGAGTCTC TCTCGTTTGA GGCCATGGAG GCTATCATTG CGAAAATCAG CGACTCCCTC
GTGGAGATTG GAGATTATAT CGAGAGCACC ACTGTATCAT CTGCTAGTGG ATCCGAGCTC
GCCCAATCGG GGACAGACGA TCCCGCACAA TTGTTAGCGC ATATCGATGC TTTGCTCGCG
TCAGTTGTTC ATCATAGTTT TGATGAGTCT GATCTTGAGG CGCTTACCGC GCGTATTGAT
GAGCATTTGC GCCTTAGCGT GACGATAATT ACCGAGGCCT TAGATAACTT TGATTTTGAT
ATTGCCCATA ACGAATTGCT CGAGTTACGG CGTATTATCA CCGCGAATCA GGAGTAG
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| Protein sequence | MGLKYMAFDW FSQFFISSQD SLLLNVYYNP LLVTISILIA IFSAFMAFQV TTQAVLSQSK
SRQQIMLLTG SVVLGGGVWS MHFIGMLAFD LCSPVTYDFG LTALSLLPSI GASWVALNLL
SKPSFKFSQV LISGILVGAG IGTMHYVGMA AMDMAPLLRY DPWIFALSIV VAVLLAIIAL
WVRTGLNQLI ASNMSAITSN FIASIVMGLA ISGMHYTGMA AARFVKPEGL ELSEQSSEIS
FYLALGVSVT TVIIICLVLI VNVIFKYKDL SLLAKSNEDR MRAMMNTAVD GIITIDGQGI
IVNVNKAVTT ILGWSPAELL GENVKKIVPE SIRPHHDGYL ARYINTREAQ IIGTGREVEA
QHKAGHSVPV RLSIGHVMQG KAHYFVGFLS DLSLRNEMEQ ELKNNEAKFR SLITNIPGIA
YRCKSTEGWP MVFISEAVLN ITGYPAEDFE LPHPKRFFSD LYYPDDIESI YAQAQPPTFS
MEYRIIRADG EVRWLFEHGN YILDETSNEV WIDGFLMDIT ERKVMEQDLV TAKNNAEQAA
AARAAFLANM SHEIRTPMNA IIGFSDILLE SVLDTEQHKQ LSTINRSAKS LMHLLNDVLD
SAKLDKGKLE LENRVFCLTD EIDTVISTLW LQAKKQRLSL EVDIAPSMAA NFIGSPERIR
QVLINLIGNA VKFTCEGKVT VSVFPQNDNL VTFEIIDTGI GMTPEQLNRV FEAFAQADAS
MSRKYGGTGL GTTISKQLVE LMGGQLEAES TLGQGSTFRF TIPLQSSSEP LETERADHGS
LPPLTLLVVD DIQQNIDLLS VWLTRQGHKV ITARDGEQAL LRMQKADIDI TLMDLQMPVM
DGLTAAKMRR EQEAESQLPH MPIIALTASV LEQDKSAAEQ AGMDGFANKP IDFALLTREI
ARVLQLNPPQ AEAESLQPLG SQLVDEAKGV KLWGSKPQFI KELMKFIAQW PEKSQALQQA
ISEQDTATIK LLSHSLKGVS GNLGLLQWMS YFAQLEKLTQ AESLSFEAME AIIAKISDSL
VEIGDYIEST TVSSASGSEL AQSGTDDPAQ LLAHIDALLA SVVHHSFDES DLEALTARID
EHLRLSVTII TEALDNFDFD IAHNELLELR RIITANQE
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