| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0769 |
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| Symbol | |
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| ID | 4251280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 894202 |
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| End bp | 896217 |
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| Gene Length | 2016 bp |
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| Protein Length | 671 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638117332 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_732906 |
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| Protein GI | 113969113 |
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| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTG AGCTACGTCA ATTTCTCGAT AGAAGCTTTC TTATCTCGAT ACGTGAATCC
TTTATCGCGT TACTGCCTTT TATTTTAATC AATTCTTTTC TCTCCCTGAT AATTACATTG
CTCGACCTTA GTATTCCGGC TTGGCAGAGC ACTGCATTTC ATCAGAGTAT TAGTTTCTTT
TCGGTACAAC TTTCAAAAAT TTTCCCGTTA CTTGCGCTGA TTTCTCTGTC TTTTCACTTT
GCTAAATATT TACAGTTATC GGCGATTGTG GTGTGTTCTT TGTCGCTGAG TCTTTTGCTC
GCGATTAATG CCCAAGATAC GGGGAATGTA TTTAATCTCG ATTATGTGCG CGCTATTTTA
GCGGATCCTA GGATTGCGGT TTTACCGATT ATTTCAGCCT ATTTATTACG ATTTTTAACC
GCTTGGAACG GATTAACCTT TATTAGGGCA AAGGCTCTTA GCCGTTACTT AAAGCTGCAC
TTAAACTTAT TTTTCCCCAT AGTAATCGGC TTTATTGGCC TGTTCGCCAT CGTTGCTGAA
GCCTCTATCT TTTTAGAATG GTTGTTTGCC CCATTCATCG ATGCACTACA GCAGGCGAGT
CTTGGCGTGC AATTGTTTAT GCGGATCCTA ATCACCCATG TACTTTGGTG TTTTGGGGTG
CATGGCGATA ATGCCTATCT GCTGCTGATT GGTGTCGATA ATGGCTTAAT GGAATTGGTG
CCGCACCTGA CTGCGAGCCA GTTTATGGAC TTGTTTATTA TCTATGGCGG TAGTGGCGCC
ACCCTATCCT TAATCATTGC CATTTTTATC GGTGCCAAAG ATAGCGCCAC TCGGCATATT
GCTAAAATTG CCACGCCCTT TGCGATTTTT AACATCAACG AGATTTTGAT CTATGGCCTC
CCCATTATCT TTAATCCACG TTTATTAGTG CCGTTTATTC TGTCGCCGTT GATTAATTTC
ATCTTAGCTT ACAGTGCTAT CCATGCTGGG ATCTTGAGTT TTGAGGGACA AAGCTTTCCT
TGGATCACGC CGCCACTGCT AAACGCTTAC ATTGCCAGCG GCCATTTGAG CGCGGTGTTT
TTTCAAGTGT TTTTAATCGG CCTTGGGGTG TTGATTTATC TTCCCTTTGT GCGGCGTTTC
TCCTTGATGT CTGAGCACTA TGAGTTTGAT AGCGAGTTAA TCAAACGCGT GCAGTTTCAG
GCGGATATTG ACCGTATGAC CGAGCAGCAT TACTCACAGC AGCAGTCTGA ATCACTAAAA
GCTGAATTAA ACCTCGAGAA GACCATTAAA GAAGTCTTGG CTGGGGAGTT ACAGCTGCAT
TATCAGCCAA AAATTGCCCT CAGCAGTGAC CATGTAGTGG GGTTTGAGGC GCTTATACGA
TTGAAGGATG AACATGGTCA CTTGAAGGGA CCTTACTTTA TTGATGCCTT TCAACGAGCG
GGGTATTCCC ACATCATCGA CCGTTTTGTA ATAAATACGG TGGCAGAGGA TCTGGCCCGC
TGGGAATTAG AAGGCTTTTT GCCTAAGGTG AGCATCAATA TCGACCCAAA CAATATTACC
GATCCCCAGT TGCTCGCGAC GTTGCACGAA AGATTAGGCA GCGTTGCCGA CCGAGTCGAG
ATTGAGATGT TAGAATCGGC CTTTATGTTA GATTTGAATC GCATCGATAG CAGCATGAGG
CAGCTTAAAC AATATGGCTT TCGCTTCTTA TTAGATGATT TCGGTACTGG GTTTTCGAGT
TTAAGTTTAC TGAGTCGGAT CAATGTCGAT GGGATTAAGC TCGACCGCAG TATTCTGGCG
AATACCAATG AGCCTAAAGG GCGGACTTTG TACCTACAAA TCTGTAAGCT TTGTAATAGT
TTAGGCTTTA GTTTGATTGC CGAAGGGGTT GAAACGCCCG CCGAGGCCGA GTTTGTCAAA
GAGGCGGGTG TGGGTTATGT GCAGGGCTGG TTATACGCCA AAGCGATGCC AGGCCCCGAG
GCCAAAGCCT TTTGGTTGGA GAGAAATAGT GACTAA
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| Protein sequence | MKFELRQFLD RSFLISIRES FIALLPFILI NSFLSLIITL LDLSIPAWQS TAFHQSISFF
SVQLSKIFPL LALISLSFHF AKYLQLSAIV VCSLSLSLLL AINAQDTGNV FNLDYVRAIL
ADPRIAVLPI ISAYLLRFLT AWNGLTFIRA KALSRYLKLH LNLFFPIVIG FIGLFAIVAE
ASIFLEWLFA PFIDALQQAS LGVQLFMRIL ITHVLWCFGV HGDNAYLLLI GVDNGLMELV
PHLTASQFMD LFIIYGGSGA TLSLIIAIFI GAKDSATRHI AKIATPFAIF NINEILIYGL
PIIFNPRLLV PFILSPLINF ILAYSAIHAG ILSFEGQSFP WITPPLLNAY IASGHLSAVF
FQVFLIGLGV LIYLPFVRRF SLMSEHYEFD SELIKRVQFQ ADIDRMTEQH YSQQQSESLK
AELNLEKTIK EVLAGELQLH YQPKIALSSD HVVGFEALIR LKDEHGHLKG PYFIDAFQRA
GYSHIIDRFV INTVAEDLAR WELEGFLPKV SINIDPNNIT DPQLLATLHE RLGSVADRVE
IEMLESAFML DLNRIDSSMR QLKQYGFRFL LDDFGTGFSS LSLLSRINVD GIKLDRSILA
NTNEPKGRTL YLQICKLCNS LGFSLIAEGV ETPAEAEFVK EAGVGYVQGW LYAKAMPGPE
AKAFWLERNS D
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