| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0730 |
|---|
| Symbol | |
|---|
| ID | 4251766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 851106 |
|---|
| End bp | 851549 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638117293 |
|---|
| Product | TraR/DksA family transcriptional regulator |
|---|
| Protein accession | YP_732867 |
|---|
| Protein GI | 113969074 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1734] DnaK suppressor protein |
|---|
| TIGRFAM ID | [TIGR02420] RNA polymerase-binding protein DksA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.000000697807 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAG GCACCAAAAA ACTTGGCGTA CTCGCTATCG CAGGTGTAAG TCCCTACCAG
GAAAAGCCGG GTGAGGAGTA TATGAACGCT AAGCAACTGG GTCACTTCAA GACAATTCTT
GAAGCTTGGC GCAATCAGTT GCGTGAAGAG GTCGACCGTA CTCTGAGTCA CATGCAGGAC
GAAGCAGCAA ACTTTCCCGA TCCTGTAGAC CGTGCAGCAC AGGAAGAAGA GTTCAGTCTC
GAACTGCGTG CGCGCGACAG AGAACGTAAA CTGATCAAGA AGATCGAAAA AACCCTTCAA
AAAATCGAAG AAGACGATTT TGGCTTCTGC GATTCTTGCG GTATCGAAAT CGGCATTCGC
CGTCTCGAAG CGCGTCCAAC GGCCGATCAA TGTATCGACT GTAAAACGCT TGCAGAGATC
AAAGAGAAGC AAATGGCGGG TTAA
|
|---|
| Protein sequence | MPEGTKKLGV LAIAGVSPYQ EKPGEEYMNA KQLGHFKTIL EAWRNQLREE VDRTLSHMQD
EAANFPDPVD RAAQEEEFSL ELRARDRERK LIKKIEKTLQ KIEEDDFGFC DSCGIEIGIR
RLEARPTADQ CIDCKTLAEI KEKQMAG
|
|---|
| |