Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0690 |
Symbol | |
ID | 4251534 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 797914 |
End bp | 798645 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638117253 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_732827 |
Protein GI | 113969034 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.000126975 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 0.647464 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGTTC CAAGAATTTA TCAACCTCAA CCATTAGCCG TAAATCAACA GCTGAATTTA GATGAGGATG GCGCAGCCCA TATTGGCAAA GTGTTGCGTA TGGGCAGTGG CGAACACATT AGCCTGTTTA ATGGCGATGG TAATGATTAT CTTGCCGAAA TTGTCGATGC GGGTAAAAAA TCGGTCACGG TAAAAGTGCT CTCCTGTGAG GCTAATCCAT CGGAATCGCC CCTCAACCTG CATTTAGGCC AAGTGATTTC CCGCGGCGAT CGGATGGAGT TCACCATTCA AAAATCCGTT GAGCTAGGGG TGAATACCAT TACGCCACTG TTTTCTGACC GCTGCGGCGT CAAACTCACT GGTGAGCGTC TCGAAAAGAA AATCCAGCAA TGGCAAAAGA TTGTGATCAG CGCCTGTGAG CAATCTGGCC GTAGCCAAGT GCCCATCGTT CGCCCCGCCA TGGAATTACA GGAATGGTGC AGCGAACCGA CCAGCGCACT CAAACTCAAC TTGCACCCAA GAGCAGCGCA CGGTATCAAT GGCTTAGATT TATCCCATAC CCGTGTACGC CTGCTGATCG GCCCCGAAGG GGGATTATCG GCGGAAGAAA TCGCCATGAC GGAAACCTAC CAGTTTACCG ATGTGTTACT CGGCCCCCGA GTGCTGCGCA CCGAAACCGC CTCACTCACG GCGATTACCG CGCTGCAACT TAGATTCGGT GACTTAGGTT AA
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Protein sequence | MRVPRIYQPQ PLAVNQQLNL DEDGAAHIGK VLRMGSGEHI SLFNGDGNDY LAEIVDAGKK SVTVKVLSCE ANPSESPLNL HLGQVISRGD RMEFTIQKSV ELGVNTITPL FSDRCGVKLT GERLEKKIQQ WQKIVISACE QSGRSQVPIV RPAMELQEWC SEPTSALKLN LHPRAAHGIN GLDLSHTRVR LLIGPEGGLS AEEIAMTETY QFTDVLLGPR VLRTETASLT AITALQLRFG DLG
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