| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0677 |
|---|
| Symbol | |
|---|
| ID | 4251888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 785132 |
|---|
| End bp | 785683 |
|---|
| Gene Length | 552 bp |
|---|
| Protein Length | 183 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638117240 |
|---|
| Product | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase |
|---|
| Protein accession | YP_732814 |
|---|
| Protein GI | 113969021 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1778] Low specificity phosphatase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.207055 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACAGC AAGGTTTTTA TGGCCCCATC AGCGACGATG TTTGGCAAAG GGCACAAAAA
ATTAAACTGC TGATCTGCGA TGTGGACGGA GTGTTTTCCG ACGGCCGCAT TTATTTGAGC
AACTCGGGGG AAGAACTCAA AGCCTTCCAC ACCCGCGATG GTTATGGCGT GCGCTCATTA
TTGACCAGTG GTTTTAATCT GGCGGTTATC ACTGGCCGCC AGTCTAAAAT TGTCGAAAAC
CGCATGACGG CACTGGGTGT AACCCATATT TATCAGGGCG TAGATAATAA ATTCGTCCCC
TATGAAGAGC TGCTGTCGCT CTACAATGTC ACCCCAGAAG AAGTCGCCTA TATCGGTGAT
GATATTGTCG ACTTGCCGGT GATGAATGTG GTCGGCCTTG CCGCCTGTGT TGCCGATGGT
CATCCCTATG TCCGCCAACA TGCCCATTTT GTGACTCACT TAAATGGTGG CCACGGTGCA
CTCAGGGAAC TCACGGATCT GCTCTTACTG AGCCAAAATA AGTTCACTTC CGCCCATGGG
ATGAGCATAT GA
|
|---|
| Protein sequence | MPQQGFYGPI SDDVWQRAQK IKLLICDVDG VFSDGRIYLS NSGEELKAFH TRDGYGVRSL
LTSGFNLAVI TGRQSKIVEN RMTALGVTHI YQGVDNKFVP YEELLSLYNV TPEEVAYIGD
DIVDLPVMNV VGLAACVADG HPYVRQHAHF VTHLNGGHGA LRELTDLLLL SQNKFTSAHG
MSI
|
|---|
| |