| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0659 |
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| Symbol | nrfA |
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| ID | 4251590 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 767809 |
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| End bp | 769230 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638117222 |
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| Product | cytochrome c552 |
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| Protein accession | YP_732796 |
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| Protein GI | 113969003 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3303] Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunit |
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| TIGRFAM ID | [TIGR03152] formate-dependent cytochrome c nitrite reductase, c552 subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000892238 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.264438 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACACG GAGATGAGAT GATGAAGAAG ATGACAGGTA AGTCCTTTGC ACTCAGTGCA
TTGGTAGCCG CGAGCTTCAT GGCTGCGGGT GCGATGGCGA GCGATAAGAC CGAGCCTCGC
AACGAAGTAT ATAAAGACAA GTTTGCTAAT CAATATAATA GCTGGCATGA CACAGCGAAA
AGCGAAGAGA TCACCGATGC ATTAGCGGGC GATCCAAGCT TAGTGATTCT GTGGGCTGGT
TATGGTTTTG CTAAAGACTA CAACGCACCA CGCGGCCATA TGTATGCTGT GACCGACGTG
CGTAACACCC TACGTACTGG CGCACCTACC AACGCCGAAG ATGGTCCAAT GCCAATGGCA
TGTTGGAGCT GTAAGAGCCC TGACGTACCT CGCCTGATTG AAGAACAAGG TGAAGATGGT
TACTTCAAAG GCAAGTGGGC TAAAGGTGGC CCAGAAGTGG TGAACACAAT CGGTTGTAGC
GACTGCCACG AAAAAGGCAC GCCAAAACTG CGTATTTCAC GCCCATTCGC TGAACGTGGT
ATGGAAGCAT TAGGCACTCC ATTCGACAAA GCCTCGAAGA AAGACAAGCA ATCTATGGTT
TGCGGTCAGT GTCACGTTGA ATACTACTTC GAGAAGAAAG ATGATCGTAA AGGCTTCGTA
AAATTCCCTT GGGATTCAGG TACTACTGTT GAACAAATGG AAGCTTACTA CGACGCTATC
GAGTTCTCTG ACTGGACTCA TTCACTGTCT AAAACCCCAA TGTTGAAGGC GCAGCACCCT
GGTTATGAAA CCTGGAAAAT GGGCGTACAC GGTAAGAACG ATGTGAGCTG TGTTGACTGT
CACATGCCTA AAGTGACTAA CGACAAAGGT CGTAAGTACA CAGATCATAA AGTGGGTAAC
CCATTCGATC GCTTCGATGA AACCTGTGCA ACTTGCCATA GCCAAAGCAA AGAGTTCTTA
GAAGGCATCA CTAAAGAACG TTATGCCAAA GTGAAAGAGC TGAAAGCACG TGCCGAAGGT
CAATTAGTGA AAGCACACTT CGAAGCGGCT AAAGCGTGGG AAGTAGGTGC AACTGAAGCC
GAAATGAAGC CAATCCTGAC TGATATCCGT CATGCTCAAT GGCGCTGGGA CTTCGCGATT
GCTTCTCACG GTGTAGCGGC TCACGCTCCA GAAGAAGCAC TGCGTATCCT AGGTACTGCG
GTTGATAAAG CGGCCGATGC CCGTGTGAAA TTAGCCCAAT TACTGGCGAA GAAAGGCGTG
ACTGATGCTG TTGCTATCCC TGATATCTCC ACTAAAGCCA AAGCTCAGGC AGCTCTGGGT
ATGGACATGG ACAAGATGAA TGCAGAGAAA GAAGCATTCA AGAAAGACAT GTTACCTAAG
TGGGATGCAG AAGCGAAAAA ACGCGAAGCA ACTTATAAGT AA
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| Protein sequence | MQHGDEMMKK MTGKSFALSA LVAASFMAAG AMASDKTEPR NEVYKDKFAN QYNSWHDTAK
SEEITDALAG DPSLVILWAG YGFAKDYNAP RGHMYAVTDV RNTLRTGAPT NAEDGPMPMA
CWSCKSPDVP RLIEEQGEDG YFKGKWAKGG PEVVNTIGCS DCHEKGTPKL RISRPFAERG
MEALGTPFDK ASKKDKQSMV CGQCHVEYYF EKKDDRKGFV KFPWDSGTTV EQMEAYYDAI
EFSDWTHSLS KTPMLKAQHP GYETWKMGVH GKNDVSCVDC HMPKVTNDKG RKYTDHKVGN
PFDRFDETCA TCHSQSKEFL EGITKERYAK VKELKARAEG QLVKAHFEAA KAWEVGATEA
EMKPILTDIR HAQWRWDFAI ASHGVAAHAP EEALRILGTA VDKAADARVK LAQLLAKKGV
TDAVAIPDIS TKAKAQAALG MDMDKMNAEK EAFKKDMLPK WDAEAKKREA TYK
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