Gene Shewmr4_0623 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0623 
Symbol 
ID4251520 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp720045 
End bp722552 
Gene Length2508 bp 
Protein Length835 aa 
Translation table11 
GC content54% 
IMG OID638117186 
ProductATP-dependent helicase HrpB 
Protein accessionYP_732760 
Protein GI113968967 
COG category[L] Replication, recombination and repair 
COG ID[COG1643] HrpA-like helicases 
TIGRFAM ID[TIGR01970] ATP-dependent helicase HrpB 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAACAATC TACCCATTCA TTCCTTATTG CCATCCCTGC GCGATGCCTT TGCGAAACAT 
GCGCAAGTGA TCCTCGAAGC GCCAACGGGT GCGGGTAAAT CGACCGCATT GCCCTTAGCC
ATGCTGGATT GGCCTGAGAT TTCTGGGCGG ATTTTAATGC TGGAACCTCG GCGTGTGGCC
GCCCGTAGCG TGGCGCAATT TATTGCCAGT TGTCGGCAGC AGGCGGTAGG GCAAGAGGTA
GGTTATCGCG TACGCGGCGA GTCAAAGGTC AGTGGTGAGA CTCGACTTGA GATTGTCACC
GAAGGGATTT TAACTCGCAT GATCCAGCAA GATCCTGAAT TAACAGGCAT CGAGATGATC
ATTTTCGACG AGATCCACGA GCGACATTTG ACCACAGATC TCGGTTTAGC CTTGGCGCTC
GAAGTGCAAA GCTCACTACG GGATGACTTA AAAATCCTCG CCATGTCGGC AACCTTATCT
GGCCTGACAT TGGCCGAGTT GATGCCCGAT GCCGCCCTGC TACAGAGTGA GGGGCGCAGT
TTCCCGGTCG AAATATTTTA TCGCCCCGTT GCTGGGCAGC AGCATTGGCT CGATCATCTG
AGCCGCGTTG TGCTCGATGC CGCGACATCC GTAGGCGATA AGGGGCCACA GGATATTTTG
GTGTTTTTGC CCGGTAAAGC CGAAATCCTC CGAGTGGCGC AGTATCTAGA AGAGCGCCTC
GATAGCAGTC ACGTGGCGGT GTGCCCACTC TATGGCGAGC TATCAGCGCA GGAACAAGAC
AGGGCGATAA AGGCCGATAG CAGTAGGCGC AAAATTGTGC TCTCAACCAA CGTGGCCGAG
TCGAGCTTGA CCATCGAGGG CATTGGCCTT GTTATCGACA GCGGTTATAA ACGCCAAGCC
AGCTTTAATC CTAAAACTGG GGTGACACGT TTAAGCCTTA AGCGCATCAG CCAAGCCTCG
GCAACCCAGC GTGCTGGCCG TGCGGGGCGT TTAGCGGCTG GCGAGTGTAT CCGTTTATGG
GGCCAAGAGG AGCATCAACG TCTGCTCAAG GCCGATGAGC CCGAAATCAG CCAAGCCGAC
TTAGTCGCCA TGGCCCACGA CTGTGCCTAC TGGGGCGCGA AATCCTTCAG CGACTTACTG
TTATTGACTG CGCCGCCCAC GGTGAACGAG GCATTAGCTT GGCAACTGCT TCAGCGTTTA
GGCATGGTCG ATGAACAAAA CAAGCTGACT GCGCATGGCA AAGCGGCCTA TGAGCAGGGG
TGTCATCCGC GCCTCGCCCA TATGTTATTG GTGGCCAAAT CTCGCGATGA ACATCAACTG
GCGGCCTTAG CCTGTTTACT GGCGGGGATT TTAGAAGCGC GGGGATTGCC ACGCAAAGGC
GCAGATATCA TGAATTATTT GCACTTTGCC ACCCAAGGCA GTGCGGGGCA GCAGGCCAAA
CAATGGCTTA AAAAGCTGGC GCTAGATAAG CAATGTACTC AGGCCGATTT AGTGGCCATC
GCCTCCCATG CCCATCATCA GGATGTCGGT TTGCTGTTGG CGCTGGCTTA TCCAGACCGG
ATTGCCAAAT CCCGTGGCGT TGAGGGGTAT CAATTGGCCA ATGGTACGGG CGTGGTGCTC
AACGCCGAAG ATGCCTTAGC GCAAACGCCT TGGCTGGTGG TGGCTGATTT TCAAGAAACC
GAAGGTAAGA ATGCCGGGCG GATTTATCTC GCTAGTCCAT TATCGCCAAG TCTGTTCGAT
GAGGAATTGG CCGAGCTGGT GGAGCGTTAT GACCAATGCG GCTGGGATGA AGCCAAGGGC
CGCGCTGTGG CCGAACGCCA AACCAAAGTC GGGCAGATTT TATTGAAATC AGAGGCTATC
GCTAATCCGA ATCGCGGCCA AATTGTGGCG GCATTACTGA GTTACATTCG TCAGCAGGGG
TTACAAATCC TTAATTGGCA CGATAACTTA GCGCAGTTTC AGGCTCGATT ACAGTTAGCG
CGCGATTTAG ATCCGAATGC CGATTGGCCG GATATGAGCG ATACCGCGCT GCTGGCAAAC
CTTGAAACAT GGCTGGCGCC CTACCTTGAA AATGTGAATA ATCTGCCGCA ATTACAAAAA
CTCGATTGCT TTAGTTTGCT GGTAAACCAA TTAACTTGGT CGCAGCAGCA GGCGCTCGAT
GCGCTGCTGC CCACCTCATG GCCGTTAGCC ACGGGCACCT TCGCGCCGAT ATTGTACGAT
GCCTCGGGGC GAGCCTTGCT GCGGGTACGT TTGCAGGAAA CCTTTGGCAT GGCTGACAGC
CCGCTACTGG CTCAAGGTAA GCTGAAGGTG ACGATGGAAT TGCTGTCACC GGCGCAGCGC
CCCTTGGCTC TAACAGCGGA TCTCGCGAGT TTTTGGCAAG GGCCCTATGT GGAAGTGAAA
AAAGAAATGC GTGGGCGTTA TCCTAAACAC CTGTGGCCGG ACGACCCTGC CAATACGCAG
CCCACAAAAT TTACCAAGAA GAAAACCTTA GGTTTATCTC AGTCATAG
 
Protein sequence
MNNLPIHSLL PSLRDAFAKH AQVILEAPTG AGKSTALPLA MLDWPEISGR ILMLEPRRVA 
ARSVAQFIAS CRQQAVGQEV GYRVRGESKV SGETRLEIVT EGILTRMIQQ DPELTGIEMI
IFDEIHERHL TTDLGLALAL EVQSSLRDDL KILAMSATLS GLTLAELMPD AALLQSEGRS
FPVEIFYRPV AGQQHWLDHL SRVVLDAATS VGDKGPQDIL VFLPGKAEIL RVAQYLEERL
DSSHVAVCPL YGELSAQEQD RAIKADSSRR KIVLSTNVAE SSLTIEGIGL VIDSGYKRQA
SFNPKTGVTR LSLKRISQAS ATQRAGRAGR LAAGECIRLW GQEEHQRLLK ADEPEISQAD
LVAMAHDCAY WGAKSFSDLL LLTAPPTVNE ALAWQLLQRL GMVDEQNKLT AHGKAAYEQG
CHPRLAHMLL VAKSRDEHQL AALACLLAGI LEARGLPRKG ADIMNYLHFA TQGSAGQQAK
QWLKKLALDK QCTQADLVAI ASHAHHQDVG LLLALAYPDR IAKSRGVEGY QLANGTGVVL
NAEDALAQTP WLVVADFQET EGKNAGRIYL ASPLSPSLFD EELAELVERY DQCGWDEAKG
RAVAERQTKV GQILLKSEAI ANPNRGQIVA ALLSYIRQQG LQILNWHDNL AQFQARLQLA
RDLDPNADWP DMSDTALLAN LETWLAPYLE NVNNLPQLQK LDCFSLLVNQ LTWSQQQALD
ALLPTSWPLA TGTFAPILYD ASGRALLRVR LQETFGMADS PLLAQGKLKV TMELLSPAQR
PLALTADLAS FWQGPYVEVK KEMRGRYPKH LWPDDPANTQ PTKFTKKKTL GLSQS