Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0623 |
Symbol | |
ID | 4251520 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 720045 |
End bp | 722552 |
Gene Length | 2508 bp |
Protein Length | 835 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 638117186 |
Product | ATP-dependent helicase HrpB |
Protein accession | YP_732760 |
Protein GI | 113968967 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGAACAATC TACCCATTCA TTCCTTATTG CCATCCCTGC GCGATGCCTT TGCGAAACAT GCGCAAGTGA TCCTCGAAGC GCCAACGGGT GCGGGTAAAT CGACCGCATT GCCCTTAGCC ATGCTGGATT GGCCTGAGAT TTCTGGGCGG ATTTTAATGC TGGAACCTCG GCGTGTGGCC GCCCGTAGCG TGGCGCAATT TATTGCCAGT TGTCGGCAGC AGGCGGTAGG GCAAGAGGTA GGTTATCGCG TACGCGGCGA GTCAAAGGTC AGTGGTGAGA CTCGACTTGA GATTGTCACC GAAGGGATTT TAACTCGCAT GATCCAGCAA GATCCTGAAT TAACAGGCAT CGAGATGATC ATTTTCGACG AGATCCACGA GCGACATTTG ACCACAGATC TCGGTTTAGC CTTGGCGCTC GAAGTGCAAA GCTCACTACG GGATGACTTA AAAATCCTCG CCATGTCGGC AACCTTATCT GGCCTGACAT TGGCCGAGTT GATGCCCGAT GCCGCCCTGC TACAGAGTGA GGGGCGCAGT TTCCCGGTCG AAATATTTTA TCGCCCCGTT GCTGGGCAGC AGCATTGGCT CGATCATCTG AGCCGCGTTG TGCTCGATGC CGCGACATCC GTAGGCGATA AGGGGCCACA GGATATTTTG GTGTTTTTGC CCGGTAAAGC CGAAATCCTC CGAGTGGCGC AGTATCTAGA AGAGCGCCTC GATAGCAGTC ACGTGGCGGT GTGCCCACTC TATGGCGAGC TATCAGCGCA GGAACAAGAC AGGGCGATAA AGGCCGATAG CAGTAGGCGC AAAATTGTGC TCTCAACCAA CGTGGCCGAG TCGAGCTTGA CCATCGAGGG CATTGGCCTT GTTATCGACA GCGGTTATAA ACGCCAAGCC AGCTTTAATC CTAAAACTGG GGTGACACGT TTAAGCCTTA AGCGCATCAG CCAAGCCTCG GCAACCCAGC GTGCTGGCCG TGCGGGGCGT TTAGCGGCTG GCGAGTGTAT CCGTTTATGG GGCCAAGAGG AGCATCAACG TCTGCTCAAG GCCGATGAGC CCGAAATCAG CCAAGCCGAC TTAGTCGCCA TGGCCCACGA CTGTGCCTAC TGGGGCGCGA AATCCTTCAG CGACTTACTG TTATTGACTG CGCCGCCCAC GGTGAACGAG GCATTAGCTT GGCAACTGCT TCAGCGTTTA GGCATGGTCG ATGAACAAAA CAAGCTGACT GCGCATGGCA AAGCGGCCTA TGAGCAGGGG TGTCATCCGC GCCTCGCCCA TATGTTATTG GTGGCCAAAT CTCGCGATGA ACATCAACTG GCGGCCTTAG CCTGTTTACT GGCGGGGATT TTAGAAGCGC GGGGATTGCC ACGCAAAGGC GCAGATATCA TGAATTATTT GCACTTTGCC ACCCAAGGCA GTGCGGGGCA GCAGGCCAAA CAATGGCTTA AAAAGCTGGC GCTAGATAAG CAATGTACTC AGGCCGATTT AGTGGCCATC GCCTCCCATG CCCATCATCA GGATGTCGGT TTGCTGTTGG CGCTGGCTTA TCCAGACCGG ATTGCCAAAT CCCGTGGCGT TGAGGGGTAT CAATTGGCCA ATGGTACGGG CGTGGTGCTC AACGCCGAAG ATGCCTTAGC GCAAACGCCT TGGCTGGTGG TGGCTGATTT TCAAGAAACC GAAGGTAAGA ATGCCGGGCG GATTTATCTC GCTAGTCCAT TATCGCCAAG TCTGTTCGAT GAGGAATTGG CCGAGCTGGT GGAGCGTTAT GACCAATGCG GCTGGGATGA AGCCAAGGGC CGCGCTGTGG CCGAACGCCA AACCAAAGTC GGGCAGATTT TATTGAAATC AGAGGCTATC GCTAATCCGA ATCGCGGCCA AATTGTGGCG GCATTACTGA GTTACATTCG TCAGCAGGGG TTACAAATCC TTAATTGGCA CGATAACTTA GCGCAGTTTC AGGCTCGATT ACAGTTAGCG CGCGATTTAG ATCCGAATGC CGATTGGCCG GATATGAGCG ATACCGCGCT GCTGGCAAAC CTTGAAACAT GGCTGGCGCC CTACCTTGAA AATGTGAATA ATCTGCCGCA ATTACAAAAA CTCGATTGCT TTAGTTTGCT GGTAAACCAA TTAACTTGGT CGCAGCAGCA GGCGCTCGAT GCGCTGCTGC CCACCTCATG GCCGTTAGCC ACGGGCACCT TCGCGCCGAT ATTGTACGAT GCCTCGGGGC GAGCCTTGCT GCGGGTACGT TTGCAGGAAA CCTTTGGCAT GGCTGACAGC CCGCTACTGG CTCAAGGTAA GCTGAAGGTG ACGATGGAAT TGCTGTCACC GGCGCAGCGC CCCTTGGCTC TAACAGCGGA TCTCGCGAGT TTTTGGCAAG GGCCCTATGT GGAAGTGAAA AAAGAAATGC GTGGGCGTTA TCCTAAACAC CTGTGGCCGG ACGACCCTGC CAATACGCAG CCCACAAAAT TTACCAAGAA GAAAACCTTA GGTTTATCTC AGTCATAG
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Protein sequence | MNNLPIHSLL PSLRDAFAKH AQVILEAPTG AGKSTALPLA MLDWPEISGR ILMLEPRRVA ARSVAQFIAS CRQQAVGQEV GYRVRGESKV SGETRLEIVT EGILTRMIQQ DPELTGIEMI IFDEIHERHL TTDLGLALAL EVQSSLRDDL KILAMSATLS GLTLAELMPD AALLQSEGRS FPVEIFYRPV AGQQHWLDHL SRVVLDAATS VGDKGPQDIL VFLPGKAEIL RVAQYLEERL DSSHVAVCPL YGELSAQEQD RAIKADSSRR KIVLSTNVAE SSLTIEGIGL VIDSGYKRQA SFNPKTGVTR LSLKRISQAS ATQRAGRAGR LAAGECIRLW GQEEHQRLLK ADEPEISQAD LVAMAHDCAY WGAKSFSDLL LLTAPPTVNE ALAWQLLQRL GMVDEQNKLT AHGKAAYEQG CHPRLAHMLL VAKSRDEHQL AALACLLAGI LEARGLPRKG ADIMNYLHFA TQGSAGQQAK QWLKKLALDK QCTQADLVAI ASHAHHQDVG LLLALAYPDR IAKSRGVEGY QLANGTGVVL NAEDALAQTP WLVVADFQET EGKNAGRIYL ASPLSPSLFD EELAELVERY DQCGWDEAKG RAVAERQTKV GQILLKSEAI ANPNRGQIVA ALLSYIRQQG LQILNWHDNL AQFQARLQLA RDLDPNADWP DMSDTALLAN LETWLAPYLE NVNNLPQLQK LDCFSLLVNQ LTWSQQQALD ALLPTSWPLA TGTFAPILYD ASGRALLRVR LQETFGMADS PLLAQGKLKV TMELLSPAQR PLALTADLAS FWQGPYVEVK KEMRGRYPKH LWPDDPANTQ PTKFTKKKTL GLSQS
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