| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0622 |
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| Symbol | |
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| ID | 4251519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 717869 |
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| End bp | 719875 |
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| Gene Length | 2007 bp |
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| Protein Length | 668 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638117185 |
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| Product | TonB-dependent copper receptor |
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| Protein accession | YP_732759 |
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| Protein GI | 113968966 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTGTATC AACCTATCAA ATTAGCCGTT ATTTTAGCGG GAGTGCTGGG CACCGCTGTA
CCTCAATTAG GCTGGTCTTC TGAGGCGAGC GATTGTGGTG AAGATAAAAA ATGTCAGGAT
TATCTAAGAG TATCTGGCGA TGTAATGCGC CAGCCTGTCC ATCTAGTGAG CGATCCTAAA
CAGAACCGTT TGCCATTGCC TGCCTACGAT GGCTCGGGAT TTTTACGCTC TATCCCTGGA
TTTAATATCA CCCGCAAAGG CGGTTCAGGT GGCGACCCTA TGTTTAGGGG GCTGGGCGGC
TCGCGCTTAA ACATAGTCGA TGATGCTCAG CATGTGTATG GCGCCTGTGG TGGACGTATG
GACCCACCGA CAAACTATAT TTATCCCGAA AGCTACGATC AGATAACGGT AATCAAAGGG
CCACAGACGG TGAAGTACGG CCCTGTCGGC ACTGCGGGCA CAATTCTATT TGAGAAAAAC
CGCCATCGCT TTAACCAAGC GGATCTTGAA GGACGGGCCA GCGCTACGGG CGGCAGTTTC
GATAGGCGAG ATGCCATGGT GGAGCTGAGC GCTGGGGATA AGAATTACTA CCTTGATTTC
GATATGAATC AATCCAGTAG TGATCATTAT GAAGATGGAA ATGGCAACAA AGTACAATCG
AGTTACGATC GGCAAAACGC CAATCTTGCC TTGGGGTGGA CACCGACAGA GCGCACTGTA
CTTGAACTGG CCTACGGTGA GTCGAGCGGC GAAGCCGAGT ATGCCGACAG GTTAAACAAG
GCGCGTCAAA TCGATAACCG TGATGCGGCG CTACTGCTAC AACACGAGTT TGAATCGAGT
TGGTTAACGG CGGTCGAATT GCAAGCCTTT AGCAATAAAA ACGACCACAT TATGGATAGG
TTCGATGAAG GGGTTAATTC AGGTGCCAAT GTGCGGCGGA TGACGGAGGG CGGCCATTTG
TGGTTCGAGT TAGCGCCACT CGATGCTCTG GATGTGACTC TTGGGCTGGA TTATATGTCG
AGCAAACACG ATGGTCGCAG CATGGCGCCC GGCGATGTCG GCTTAGACGA CTTACTCAAT
AAACCCTTTA AAGAGGATAT GCGCTATCAA AACTATGGGC TGTTTGCTGA GTCCCGCTAT
CGTTTTGAAG CGAGTGACCT AGGCAGCAGT AGCTTGCACG CTGGATTGAG GCTAGACGAC
TGGAATAGCG AGCTCTTGAT TGCTCAGCAG GGCGAGCGGG ACGATACCCT CTACAGCGGA
TACCTGCGTT ATGAGTTTCA AACCGCGCAG CACCAATATT ATGCAGGCTT TGGCTCGGCG
CAGCGGATGC CGGATTATTG GGAGATTATG AAGGCTAGCG CCGATAACCC CGCACAAAAA
GCCTTTGACC TGAAAGCGGA AACCACCAAT CAGTTCGATA TAGGTTGGAT TTATCAGGGG
CCTGTCGAGG CTTCGGTGTC ACTCTTCTAT GGTGAGATTG CGGACTATAT TCTGATTGAT
TCCAGCGGCC AAGCCACCCT TGCCCGTAAT ATTGATGCGA GTCTCTACGG TGGTGAGGCC
AGTCTAGATT ATGCGCTGAA TGAGCAGTGG TCGAGCCAAC TCACGGTGAG TTATACCCAT
GGCGAAAACG ATACCGACAA GGTGGCGCTT GGGCAAATAT CGCCGTTAGA GGCCAGATTA
ACCGTTAACT ACCAATGGCA ACGTTGGACC ATGGCGGCGC AGTGGCGAGT GGTGGCCGCG
CAAGACCGCT ACACCTTAGG CCATGGCAAT ATCGTGGGGC AAGACTTAGG CACGAGCAGC
GGTTTTGGTA CCTTGGCGCT CAATGCTTCT TGGTCGTATA ACAAGGATTT ATCCTTAATT
TTGGGTGTCG AAAACCTGTT TGATACCGCC TATGCCGAGC ATGTGAGTAA GGCGGGCACG
GGGAACGATC TGCCGGGCAG TGAGGCCATG TTTAGGGTCA ACGAGCCGGG CCGTAATCTA
TGGGCCAAGC TGACCTATCA GTTCTAA
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| Protein sequence | MLYQPIKLAV ILAGVLGTAV PQLGWSSEAS DCGEDKKCQD YLRVSGDVMR QPVHLVSDPK
QNRLPLPAYD GSGFLRSIPG FNITRKGGSG GDPMFRGLGG SRLNIVDDAQ HVYGACGGRM
DPPTNYIYPE SYDQITVIKG PQTVKYGPVG TAGTILFEKN RHRFNQADLE GRASATGGSF
DRRDAMVELS AGDKNYYLDF DMNQSSSDHY EDGNGNKVQS SYDRQNANLA LGWTPTERTV
LELAYGESSG EAEYADRLNK ARQIDNRDAA LLLQHEFESS WLTAVELQAF SNKNDHIMDR
FDEGVNSGAN VRRMTEGGHL WFELAPLDAL DVTLGLDYMS SKHDGRSMAP GDVGLDDLLN
KPFKEDMRYQ NYGLFAESRY RFEASDLGSS SLHAGLRLDD WNSELLIAQQ GERDDTLYSG
YLRYEFQTAQ HQYYAGFGSA QRMPDYWEIM KASADNPAQK AFDLKAETTN QFDIGWIYQG
PVEASVSLFY GEIADYILID SSGQATLARN IDASLYGGEA SLDYALNEQW SSQLTVSYTH
GENDTDKVAL GQISPLEARL TVNYQWQRWT MAAQWRVVAA QDRYTLGHGN IVGQDLGTSS
GFGTLALNAS WSYNKDLSLI LGVENLFDTA YAEHVSKAGT GNDLPGSEAM FRVNEPGRNL
WAKLTYQF
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