| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0621 |
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| Symbol | |
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| ID | 4251518 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 715476 |
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| End bp | 717662 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638117184 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_732758 |
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| Protein GI | 113968965 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATG GTTTAGCAAA TCCACTCCAA CAGGCATTAG TGACGATTTT TAGCGAAACG
CCGCTAGAAA CCCTAGAGCA AAATGTTGAC CAAGCCCTAG AGGCCATCAC GCTGCAGTTG
CATTGTGATG GGGTATTTGT GCTGACGGGC AGTTTAGCCC TAGACCATCT ACGTACCCGT
AATCTGTATT TAAAACCGCA ATTTAGCCAG GGCCAACAGA CACGGGTCTG GCCGCTCGCG
CGTATGCCGT TTTTTCGCTC CTTAGTGAGA ACCCCCACAC TGCTGAATCT TCCCGATGTC
GATACCTTGC CCGCGGAGGC TCAAGCGGAG CGGGCGTTAC TTCGTGATTG GAACGTTAAA
AGCCTATTGG TGTTACCGCC TGTAGTGTTT GGCGAAACCC GTATCGCCCT CGGCGCGGTC
AATTGCTCGG AATGCTGTGA ATGGAGTGCG GAGTTTATTC GGGAATTTCA ACATGCGGCT
GTGATGATTG GCTCGGCGAT GGAACTGACC CGTATCGCCC ACGATATGTT GGCCAGTGAG
CACAAATATC GCGAAGTTTT TAATCAATTG CCTTTAGCCT GCGCCCTGCT CGATAAACAG
AACCAACTGA CCATGCTGAA CAAAGTCGCG TTGCAAACCT TGCCGGTGCA GCATGGATAC
GATTTATTCA GCATGGTGCG CGAAGAGGAG CATGCCATGC TCACCGACAC GCTGCACATG
GTGCGCGAAG GCGTATTGGG GCAAGCCTGG TGTGAGTTAC CCTTAAAATC TAACCTGCAG
TTGGATTGGC TGAGGCTGAG CTTTAGCCAA ATTCACGGCA ATAAAGATAC CCTAGTGATG
ATTGCCGAGG ATGTCAGTGA AAAATATCGC CTCGCCGATG AGCTGTCCTT CCATGCCAAT
TATGATGCTT TGACTGGGTT ACCGAATCGG CTGCATTTTG AGGCCTTGCT CGAAAATCTG
CTGCAAACCA AAGATGAGAT GCCCACCTGC GTTGCCTTTA TCGATGTCGA TCAGTTTCAG
GTGATCAACA ATGTGAGCGG CCATCAAGCC GGTGATAAAT TACTGTGCCA GCTTGCATTA
CGTCTCAAGC AATTGGTTCG TAAGGGGGAT ATTGTCGCGC GTTTGGGCGG CGATGAGTTT
GGGATTTTAA TGCATTATTG CAATGTGGAT TCGGCGCAGC ATATCGCTAA TCGGATCTGC
ACTCAGTTAG CGACCCACGA GTTTATTTGG GAAAACCGTT GCCACAATGT CAGTGTCAGC
ATGGGGATTG CTAAGCTCGA AAAGTCTGCG ACGGATATTT ACACTGTGAT GAGTCAGGCC
GATGCGGCCT GTCGTCTCGC GAAGGATAAG GGCCGCAATG GCTGGCACTT GTACAGTGCC
AAAGATCCTA AAATGACCCG CCTGTATACC GAGATGATGG CCTCAGTCGA TATCGTCAGC
GCCCTCGCGC TAAATCAATT TGAGCTGTAT TTCCAAAGCA TTGCCCCGTT AAGTCGCGAA
GAATCCGGCC TGCATTTAGA GGTGCTACTG CGGATGGTGC AGGCCAATGG CACTATTGTT
TCGCCGGCGA TCTTTCTCCC CGCGGCGGAG CGTTACAACT TGGCGGCCAA GGTCGACTTG
TGGGTGATCG ATAATCTGCT GAAGTGGGGC AGTAGCCATT TGGATATTTG GCAACAGCTG
GAGTTGGTCT CGGTCAACCT GTCGGCGACC TCGTTAGGTG ACAGCGAGTT TATGAATTGG
CTCGAAATGC GCCTGATGAC CGAACCTGAG CTGGTGGATA AGCTCTGCAT TGAGATCACC
GAAACCGCCG CGGTGAGCCA ATTAGATCAG GCCACTAAAT TGATTGAAGT GCTGAGGCCA
TTAAACTGTC AACTCGCGTT GGATGATTTT GGCGCGGGGT TCTCAAGCTT TGCCTACCTT
AAACGCTTGA ACGTGGATTA TGTCAAAATC GACGGCCAGT TTGTGATTAA TCTCTGCGAG
GATGAGGCCG ACCAAGCCAT CATTAAAGCC ATTTGCCAGT TAGGGCAAGA TATGGGCTTC
GATGTAGTGG CGGAGTTTGT TGAATCCACC GAAATTGCCA CTAAGTTAAA AAGCCTAGGC
GTGGATTATG CCCAAGGTTA TGCCATCAAC AAGCCTATGC CGTTACTGAC TTTAACCTCT
GGCTTGGCCG AACCTTGGCT ACGCTAA
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| Protein sequence | MSDGLANPLQ QALVTIFSET PLETLEQNVD QALEAITLQL HCDGVFVLTG SLALDHLRTR
NLYLKPQFSQ GQQTRVWPLA RMPFFRSLVR TPTLLNLPDV DTLPAEAQAE RALLRDWNVK
SLLVLPPVVF GETRIALGAV NCSECCEWSA EFIREFQHAA VMIGSAMELT RIAHDMLASE
HKYREVFNQL PLACALLDKQ NQLTMLNKVA LQTLPVQHGY DLFSMVREEE HAMLTDTLHM
VREGVLGQAW CELPLKSNLQ LDWLRLSFSQ IHGNKDTLVM IAEDVSEKYR LADELSFHAN
YDALTGLPNR LHFEALLENL LQTKDEMPTC VAFIDVDQFQ VINNVSGHQA GDKLLCQLAL
RLKQLVRKGD IVARLGGDEF GILMHYCNVD SAQHIANRIC TQLATHEFIW ENRCHNVSVS
MGIAKLEKSA TDIYTVMSQA DAACRLAKDK GRNGWHLYSA KDPKMTRLYT EMMASVDIVS
ALALNQFELY FQSIAPLSRE ESGLHLEVLL RMVQANGTIV SPAIFLPAAE RYNLAAKVDL
WVIDNLLKWG SSHLDIWQQL ELVSVNLSAT SLGDSEFMNW LEMRLMTEPE LVDKLCIEIT
ETAAVSQLDQ ATKLIEVLRP LNCQLALDDF GAGFSSFAYL KRLNVDYVKI DGQFVINLCE
DEADQAIIKA ICQLGQDMGF DVVAEFVEST EIATKLKSLG VDYAQGYAIN KPMPLLTLTS
GLAEPWLR
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