Gene Shewmr4_0604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0604 
Symbol 
ID4251185 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp697470 
End bp698168 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content45% 
IMG OID638117167 
Productcytochrome c1 
Protein accessionYP_732741 
Protein GI113968948 
COG category[C] Energy production and conversion 
COG ID[COG2857] Cytochrome c1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000593 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0809473 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT TACTGATTGC ATTAGTTACA TTGCTCCCGA CGCTGGCGAT GGCCGCGAGC 
GGACACAATG TACATTTAGA AAAAGCCAAT GTTGATTTGC ATGATAAGGC TTCTTTAGAG
CGTGGTCTGG ATATGTTCCA ACACTATTGC TCTGGTTGTC ATAGCACTCA GTATCAACGC
TATGAACGTG TGGCGAACGA TCTCGGTATT TCTGCCGATG ATATGCGTAA CAAGTATATG
TTTACCGATG CTAAAATCGG TGAGCTGATG CAAAACGCGA TTCCACACAA AGATGCGGCT
AAATGGTTTG GTGCAACACC ACCAGACTTA ACCTTAGTAG CACGTGTTCG TGGCGAAGAT
TGGGTGTATT CATACCTCAA AGGCTTCTAC AAAGACCCAA GCCGTCCATT CGGCGTCAAC
AATACTGTCT TCCCATCTGT GGGTATGCCA CACGTTCTTG AAGAACTGCA AGGCACACCT
GTTAAGCAAG AAGATGGCAC TATTGTGGTC TCAGGTGGTA AGTTAAACGC AGAAGAGTAC
GACCAAGCAG TTCGTGATAT CACTGGCTTC TTAGTCTATT CGGCTGAACC TGTTAAGTTA
GAGCGTCAAG CGCTAGGTTG GTGGGTGCTC GGATTCCTGT TTATCTTCTT TATTGTGGCC
TACCTCTTGA AGAAAGAGTA CTGGAAAGAT GTACACTAG
 
Protein sequence
MKKLLIALVT LLPTLAMAAS GHNVHLEKAN VDLHDKASLE RGLDMFQHYC SGCHSTQYQR 
YERVANDLGI SADDMRNKYM FTDAKIGELM QNAIPHKDAA KWFGATPPDL TLVARVRGED
WVYSYLKGFY KDPSRPFGVN NTVFPSVGMP HVLEELQGTP VKQEDGTIVV SGGKLNAEEY
DQAVRDITGF LVYSAEPVKL ERQALGWWVL GFLFIFFIVA YLLKKEYWKD VH