Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0598 |
Symbol | |
ID | 4251179 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 691612 |
End bp | 691884 |
Gene Length | 273 bp |
Protein Length | 90 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638117161 |
Product | RNA-binding protein Hfq |
Protein accession | YP_732735 |
Protein GI | 113968942 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00147514 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00000962833 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCTAAGG GGCAATCTTT ACAAGACCCA TTTTTGAACG CACTACGCCG CGAGCGCGTT CCTGTATCAA TTTACTTGGT AAACGGCATT AAACTCCAAG GACAGGTAGA GTCGTTTGAT CAGTTTGTCA TTCTGTTGAA AAACACAGTG AGCCAAATGG TTTACAAACA CGCTATTTCT ACCGTAGTAC CTGCTCGTCC ATTTAACGTT GCTGGCCATC AAAATGCCCA GGGCGGTTAT GGTGCGCAAG ACGATATGCC AAGTGGCGAA TAA
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Protein sequence | MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS TVVPARPFNV AGHQNAQGGY GAQDDMPSGE
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