Gene Shewmr4_0595 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0595 
Symbol 
ID4251718 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp687264 
End bp688652 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content49% 
IMG OID638117158 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_732732 
Protein GI113968939 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000955274 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000140637 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACTAAAA ATAAGCATTA CTTTCAGACT ATTACTCTTT TTTTGTGCGC TTTTTTTGCT 
GTAGCAGCCC ACGCGGCTAA CCAGCTTGAG GGCGTACGTA TTTGGGCTGC CCCCGAGTCG
ACCCGTGTGG TGTTCGATTT GAGCGAAGCG CCTAATTACA CTTATTTTTC CCTCGATGGG
CCCAATCGTT TGGTGGTCGA CCTTAAAAAG GCTTCGACAA AACTGAGCCT GAAAAATATC
GATAACAACA GTAAATTGGT TAAAGGGGTT CGCGTCAGCA AATCACCCAC TAAAGGTGAT
TTACGTTTGG TGATCGATCT GGTTAAGCCA TTAAATGCTA ACCTGTTTTC TCTACCAGTG
ACGGCGCCCT ATGGTAATCG TCTGGTGGTC GATCTCGAGG ATAAAACCTT AACCACGGCG
ACAGCTGTGG TGAGTTCAAC TCCCGTTAAA ACGGTTACTC AATCGGCGCA ATCGTCCCGT
GATATTGTGG TGGCCATTGA TGCGGGTCAT GGTGGTGATG ATCCTGGTTC TATTGGGCCT
TCAGGTGTTT ACGAGAAAAA AGTCGCACTG GAAATAGCAA AAAGAGTGGC CAGTAAGATC
AACGACACGC CGGGTATGCG CGCCGTGATG ATCCGTACCG GCGATTACTT TGTGAATTTG
AACAAGCGCT CCGAGCTAGC CCGGAACAGT AAGGCCGATT TACTGATTTC TATCCACGCC
GATGCCTTTA CCTCGCCTCA GCCAAAGGGG GCGTCTGTGT GGGTATTGTC GATGCGCCGC
GCGAACAGTG AAATTGGTCG TTGGTTAGAG CAAAAAGAGA AACACTCAGA ACTCTTAGGT
GGTGCAGGGG AAATTATCCA AAATACCGAT AATGAACAGT ACCTTGCAAT GACTTTGCTC
GACATGTCCA TGAACAGTTC GATGGCCATA GGTCACTCTG TTGCTGGGGA TATTCTCAAG
GATCTCGGCT CGGTGACCGA GCTGCATAAG AGTCGCCCTG AGTCTGCGAG CCTTGCGGTA
TTAAAATCCC CCGATATTCC CTCCATTCTG GTGGAGACAG GATTTATCTC GAATCCGAAG
GAAGAGCGGT TACTCAATAG CAGTCGCCAT CAGGAAAGCA TTGCCACAGC TATCTACAAG
GGCGTGAGCC GTTATTTCCA CAATAATCCG CCGGCAGATA CCCTGTTAGC GAAGCGTAAT
AGTGGTAGTT CGACGACTAG AGCGAGCGCT AAATCCTCGA GCAATATTAA GCACAAGGTG
AGCCGCGGTG AGTCACTTTC GGCAATAGCT CAACGTTATC AAGTGCCTAT GGCCAGCATT
AAGCGCGCCA ATGGCATGAA GACGGATGTG GTGCAACTCG GACAAACACT CGTCATTCCT
GAGAGTTAA
 
Protein sequence
MTKNKHYFQT ITLFLCAFFA VAAHAANQLE GVRIWAAPES TRVVFDLSEA PNYTYFSLDG 
PNRLVVDLKK ASTKLSLKNI DNNSKLVKGV RVSKSPTKGD LRLVIDLVKP LNANLFSLPV
TAPYGNRLVV DLEDKTLTTA TAVVSSTPVK TVTQSAQSSR DIVVAIDAGH GGDDPGSIGP
SGVYEKKVAL EIAKRVASKI NDTPGMRAVM IRTGDYFVNL NKRSELARNS KADLLISIHA
DAFTSPQPKG ASVWVLSMRR ANSEIGRWLE QKEKHSELLG GAGEIIQNTD NEQYLAMTLL
DMSMNSSMAI GHSVAGDILK DLGSVTELHK SRPESASLAV LKSPDIPSIL VETGFISNPK
EERLLNSSRH QESIATAIYK GVSRYFHNNP PADTLLAKRN SGSSTTRASA KSSSNIKHKV
SRGESLSAIA QRYQVPMASI KRANGMKTDV VQLGQTLVIP ES