| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0595 |
|---|
| Symbol | |
|---|
| ID | 4251718 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 687264 |
|---|
| End bp | 688652 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638117158 |
|---|
| Product | N-acetylmuramoyl-L-alanine amidase |
|---|
| Protein accession | YP_732732 |
|---|
| Protein GI | 113968939 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000955274 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.0000000140637 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA ATAAGCATTA CTTTCAGACT ATTACTCTTT TTTTGTGCGC TTTTTTTGCT
GTAGCAGCCC ACGCGGCTAA CCAGCTTGAG GGCGTACGTA TTTGGGCTGC CCCCGAGTCG
ACCCGTGTGG TGTTCGATTT GAGCGAAGCG CCTAATTACA CTTATTTTTC CCTCGATGGG
CCCAATCGTT TGGTGGTCGA CCTTAAAAAG GCTTCGACAA AACTGAGCCT GAAAAATATC
GATAACAACA GTAAATTGGT TAAAGGGGTT CGCGTCAGCA AATCACCCAC TAAAGGTGAT
TTACGTTTGG TGATCGATCT GGTTAAGCCA TTAAATGCTA ACCTGTTTTC TCTACCAGTG
ACGGCGCCCT ATGGTAATCG TCTGGTGGTC GATCTCGAGG ATAAAACCTT AACCACGGCG
ACAGCTGTGG TGAGTTCAAC TCCCGTTAAA ACGGTTACTC AATCGGCGCA ATCGTCCCGT
GATATTGTGG TGGCCATTGA TGCGGGTCAT GGTGGTGATG ATCCTGGTTC TATTGGGCCT
TCAGGTGTTT ACGAGAAAAA AGTCGCACTG GAAATAGCAA AAAGAGTGGC CAGTAAGATC
AACGACACGC CGGGTATGCG CGCCGTGATG ATCCGTACCG GCGATTACTT TGTGAATTTG
AACAAGCGCT CCGAGCTAGC CCGGAACAGT AAGGCCGATT TACTGATTTC TATCCACGCC
GATGCCTTTA CCTCGCCTCA GCCAAAGGGG GCGTCTGTGT GGGTATTGTC GATGCGCCGC
GCGAACAGTG AAATTGGTCG TTGGTTAGAG CAAAAAGAGA AACACTCAGA ACTCTTAGGT
GGTGCAGGGG AAATTATCCA AAATACCGAT AATGAACAGT ACCTTGCAAT GACTTTGCTC
GACATGTCCA TGAACAGTTC GATGGCCATA GGTCACTCTG TTGCTGGGGA TATTCTCAAG
GATCTCGGCT CGGTGACCGA GCTGCATAAG AGTCGCCCTG AGTCTGCGAG CCTTGCGGTA
TTAAAATCCC CCGATATTCC CTCCATTCTG GTGGAGACAG GATTTATCTC GAATCCGAAG
GAAGAGCGGT TACTCAATAG CAGTCGCCAT CAGGAAAGCA TTGCCACAGC TATCTACAAG
GGCGTGAGCC GTTATTTCCA CAATAATCCG CCGGCAGATA CCCTGTTAGC GAAGCGTAAT
AGTGGTAGTT CGACGACTAG AGCGAGCGCT AAATCCTCGA GCAATATTAA GCACAAGGTG
AGCCGCGGTG AGTCACTTTC GGCAATAGCT CAACGTTATC AAGTGCCTAT GGCCAGCATT
AAGCGCGCCA ATGGCATGAA GACGGATGTG GTGCAACTCG GACAAACACT CGTCATTCCT
GAGAGTTAA
|
|---|
| Protein sequence | MTKNKHYFQT ITLFLCAFFA VAAHAANQLE GVRIWAAPES TRVVFDLSEA PNYTYFSLDG
PNRLVVDLKK ASTKLSLKNI DNNSKLVKGV RVSKSPTKGD LRLVIDLVKP LNANLFSLPV
TAPYGNRLVV DLEDKTLTTA TAVVSSTPVK TVTQSAQSSR DIVVAIDAGH GGDDPGSIGP
SGVYEKKVAL EIAKRVASKI NDTPGMRAVM IRTGDYFVNL NKRSELARNS KADLLISIHA
DAFTSPQPKG ASVWVLSMRR ANSEIGRWLE QKEKHSELLG GAGEIIQNTD NEQYLAMTLL
DMSMNSSMAI GHSVAGDILK DLGSVTELHK SRPESASLAV LKSPDIPSIL VETGFISNPK
EERLLNSSRH QESIATAIYK GVSRYFHNNP PADTLLAKRN SGSSTTRASA KSSSNIKHKV
SRGESLSAIA QRYQVPMASI KRANGMKTDV VQLGQTLVIP ES
|
|---|
| |