| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0588 |
|---|
| Symbol | |
|---|
| ID | 4251711 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 679761 |
|---|
| End bp | 680645 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638117147 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_732725 |
|---|
| Protein GI | 113968932 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | [TIGR00688] rarD protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0107806 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCCAGA CCTCTAAATC TTCGGGATTA ATCGAATTAC ACTTAGCTGT GCTGATGTTT
GGCGGCACAG CTTTGTTTTC AAAGTTAATT CCCTTAAGCG CACTCGATAT CACCTTCTTA
CGCTGTGTGG TCGCGGCGTT AGTCTTGACG TTACTCATCA AGTTCCGCGG TAAATACTTA
AGCCTTGCCA GCAAACAGGA TTATCTGGTT GCTATTGGCT TAGGCGTGAT AGTCAGCTTA
CACTGGGTCA CCTACTTTGC CGCGATGCAA CTCTCATCGG TCGCCATCGG CATGATTGCC
TTCTTCACCT ATCCGGTGAT GACAGTCATT GCCGAACCGT TATTAACGGG CAATAAAATC
AAGCTGATGG ATATTATCAG CGGTGTTTTA GTGCTGATAG GCGTAGTGCT ATTGATCCCC
GAAGCCAATC TTGGCAACGA TACAACCTTA GGGATTGCGG TCGGGATTGT CTCGGCGATG
TTATTTACCG CCCGTAACCT GCTGCAAAAA CGCTATTTTT CCCAATATAG CGGCCCCCAT
GCCATGTTTT ATCAGACCTT AGTGGCGGCG GTGTTTCTTA TGCCTTGGCA TCAAACCGAG
TTGCAGACTA TCTCCCTCGG GACCTGGGGC TTGATTGTGC TGCTCGGGGT GGTATTTACC
GCCGCGCCCC ATGCACTCTT CACCTCGGCA TTGCGCCAAT TAAGCGCTAA AACCGTCGGG
TTAGTCTCCT GCCTACAGCC CTTCTACGGA GCCATGTTGG CATTAGTGAT CTTAGGCGAA
GCACTGAATC TCAATACCCT GATAGGCGGA ACCATCATAG TCGCCACCGC CATCTTCGAA
ACCCATCAAT CCCACCAGTC ACAACGGCGA AAAAAGAACG TCTGA
|
|---|
| Protein sequence | MSQTSKSSGL IELHLAVLMF GGTALFSKLI PLSALDITFL RCVVAALVLT LLIKFRGKYL
SLASKQDYLV AIGLGVIVSL HWVTYFAAMQ LSSVAIGMIA FFTYPVMTVI AEPLLTGNKI
KLMDIISGVL VLIGVVLLIP EANLGNDTTL GIAVGIVSAM LFTARNLLQK RYFSQYSGPH
AMFYQTLVAA VFLMPWHQTE LQTISLGTWG LIVLLGVVFT AAPHALFTSA LRQLSAKTVG
LVSCLQPFYG AMLALVILGE ALNLNTLIGG TIIVATAIFE THQSHQSQRR KKNV
|
|---|
| |