Gene Shewmr4_0571 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0571 
Symbol 
ID4251134 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp653058 
End bp654032 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content48% 
IMG OID638117130 
Productdiguanylate cyclase 
Protein accessionYP_732708 
Protein GI113968915 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAAACG ATCAAAGCGC AATGAACGAA CTCCATTGGC TTATCGATAT GGTGCAAACC 
ATCGAAGTGG GTCTAGTGGT ATTAGATCGC GATTATAATA TCCAACTGTG GAACGGCTTT
ATGGAAAACC ATAGCGGCGT ATCCCCTAAT TCGATTAAAG GGCAAAACCT GTTCACCCGT
TTTCCTGAGC TACCAGCGAC TTGGTTAAAG CAAAAGATGG AATCGGTTTT TATGCTGAAA
AATCGAGCCT TTATCAGCTG GGAACAAAGA CCCTACGTGT TTCAGTTTAA AAACTACCGC
CCCATTACCG GACGGGCCGA TTTTATGTAC CAGAACGTGA CGCTGTTGCC TCTGGCCTCA
TTAACCGGAA AAATCACCCA TATCAGCGTG ATTATTTATG ATGTCACCGA CATCGCCGTC
AACAAGCTAC AGCTCAAGGC CGCCAACGAG CAGTTAGAAC GCCTCAGCCA GACCGATGGC
CTGACACAGC TCCATAATCG CCGCCATTGG CAACAATGTT TAGAGCATGA GTTTGACCTC
CACGCCCGTT ATTCGGGGAT GTCGAGCTTG GTCATGATAG ACATAGACCA TTTCAAAAGA
ATCAACGATA CCTACGGCCA TGTCGCGGGT GATAAGGTGA TTCAGCATAT CGCCCATATC
CTAAGCCATT CATTACGGGA GACAGATTGT GTCGGCCGCT ATGGTGGTGA GGAGTTCGCT
GTGGTCATGC CCAATACCTG TGGCGCCGAT GCCCTCAACT TTACCGAGCG TTTGCGGGAA
AGAATTGCCG ACTCCACCAT AGTGTACGAA GGGCTGAAGA TAAAAGTCAC AGTGAGTCTA
GGCGTGTGTG AAATTGGCAA ACATATCACT AGCAGCTCTG GCTGGATTTC TTGCTCAGAC
AAAGCCTTAT ACGAAGCCAA GCAGAAGGGG CGTAACTGTA GCGTCCTACA CACAGCGCAA
ACTAGTGGTT ACTAA
 
Protein sequence
MSNDQSAMNE LHWLIDMVQT IEVGLVVLDR DYNIQLWNGF MENHSGVSPN SIKGQNLFTR 
FPELPATWLK QKMESVFMLK NRAFISWEQR PYVFQFKNYR PITGRADFMY QNVTLLPLAS
LTGKITHISV IIYDVTDIAV NKLQLKAANE QLERLSQTDG LTQLHNRRHW QQCLEHEFDL
HARYSGMSSL VMIDIDHFKR INDTYGHVAG DKVIQHIAHI LSHSLRETDC VGRYGGEEFA
VVMPNTCGAD ALNFTERLRE RIADSTIVYE GLKIKVTVSL GVCEIGKHIT SSSGWISCSD
KALYEAKQKG RNCSVLHTAQ TSGY