| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0555 |
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| Symbol | |
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| ID | 4251783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 637466 |
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| End bp | 639217 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117114 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_732692 |
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| Protein GI | 113968899 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTT TAGATCTGGC AAAAGAGCTT GATAAGATAA TCACAAAGGG GGCAATCATC
CCGCTTTTTC AGCCCATATT CAATATCTTG GAACACAAGA TCCACGGATT TGAAGCGCTT
AGCCGTGGGC CTGAGCACAG CCCGCTATAC TCGCCCATTC CGCTGTTTAA AACCGCAGAA
CATCAGGGCA AATTGAGCGA GCTCGAGACA CTTTGCCGCC GTATTTCGCT GGAACAATTT
AAACTGCGCC AGTTCCAAGG CCGTTTGTTT ATCAATATTT CCCCTAAGGC CCTGCTCGAT
CCCACCCATC CTAAGGGCAT GACGCTGCAA CTGTTACAGC AGCTTGGGAT CTCACCTTCA
CAGGTGGTGA TTGAGTTATC GGAGCAATAT CCCGCCGACG ATATCGACTT ACTGAAATCT
TGCCTGAATC ACTATCGCAG CCAAGGCTTT ATGACCGCTA TCGATGATTT AGGTGCGGGT
TACTCGGGTT TACGGCTCTG GTCTGAGTTA TCGCCCGACT ATGTGAAAAT CGATCGCCAC
TTTATCCACC AAATCGATTC GACCCCGGTT AAACAAGAAT TTGTGCGCTC GATTGTCGAA
CTGTGCCAGA GCCTCACCTG TAAAGTGATT GCCGAAGGGA TTGAAACCCA AGAGGAACTC
GCCGTACTCA AACAGCTAGG CATAGTCTAT TGTCAGGGGT ATTTGCTCGG GCGCCCCGAG
GCACTGCCGA GTCGCGCCAT GAAAGCGACC TTAGTGCAGA ATAATACCCA AGTTCAGCCC
AGATACAGCG AATCCGCCGA AAGTCTCTGC ACCAGCGCCA TAACAGTGGT ACCGACACTC
AAGCTTAAGC ACTTAAGCGA CACTTTTAGC TCTCAACCCG CCTTACAGGC CGTGGTTGTG
GTGCAAGATC AACTGCCGCT GGGGATCATT AGCAGAGCGA CTTTGCTGGA GCTTTTTAGC
ACGCCCTATG GCCGAGCCCT GCATGAAAAC CACGCCGTCA GTGAAGTGAT GGACCCGCAA
GTGTTGCAGA TTGAGGCCAG CGAACCCCTG TCGATTGTGA GCCAATTACT GACCTCGGAG
AGCGCCAATA CCGTCGCCCA GCAATTTATC ATTCTGCGCC GTGGCAAGTT GCTCGGCATT
GGCCACACTA AAGATTTGCT ACAGCGGATC ACCGAGCACA GGATCAAGAT GGCAAGACAT
GCCAATCCGT TAACGGATTT ACCCGGTAAT GTGCCGATCC AGGAAGAACT CAAACGCCTC
AGAAACCAAC AAAAGCCCTT CTATTTGGCC TATTTTGATC TCTGCAATTT CAAGCCCTAT
AACGATATCT ATGGCTTTTG CCGCGGTGAT GAGGTGATCT GCGAAGTCGC CAATCTGTTA
GTGAAATACA AGACGGACAA CTGCTTTATC GGCCATGTGG GTGGGGATGA CTTTGTGGTG
ATCAGTACCT GCGAGCAACT CATCGACCGC TGCCAACGCA TTTTGACGGA GTTTGAGACC
AATAAACCGC TCTTCTACAG CACTGAGCAT TGGCAAGCCC AAGAGATGCT CGCCGATGAT
AGGCAAGGAC AAGCCTGTTA TCACAAGTTA ATCAGCCTCT GTGTCGGCGT ACTTACCCCC
GCCCATACCT ACAACTGCAA TGAACATAGC CTATCGACCT TGAGTGCCAA GGCAAAAAAA
CAGGCAAAAT CCGCGAGTAA CGGATTTTGC CTGTTAGAAG AACTCAATAT GACCCAAGCC
CTAAGTGCTT AG
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| Protein sequence | MTSLDLAKEL DKIITKGAII PLFQPIFNIL EHKIHGFEAL SRGPEHSPLY SPIPLFKTAE
HQGKLSELET LCRRISLEQF KLRQFQGRLF INISPKALLD PTHPKGMTLQ LLQQLGISPS
QVVIELSEQY PADDIDLLKS CLNHYRSQGF MTAIDDLGAG YSGLRLWSEL SPDYVKIDRH
FIHQIDSTPV KQEFVRSIVE LCQSLTCKVI AEGIETQEEL AVLKQLGIVY CQGYLLGRPE
ALPSRAMKAT LVQNNTQVQP RYSESAESLC TSAITVVPTL KLKHLSDTFS SQPALQAVVV
VQDQLPLGII SRATLLELFS TPYGRALHEN HAVSEVMDPQ VLQIEASEPL SIVSQLLTSE
SANTVAQQFI ILRRGKLLGI GHTKDLLQRI TEHRIKMARH ANPLTDLPGN VPIQEELKRL
RNQQKPFYLA YFDLCNFKPY NDIYGFCRGD EVICEVANLL VKYKTDNCFI GHVGGDDFVV
ISTCEQLIDR CQRILTEFET NKPLFYSTEH WQAQEMLADD RQGQACYHKL ISLCVGVLTP
AHTYNCNEHS LSTLSAKAKK QAKSASNGFC LLEELNMTQA LSA
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