| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0545 |
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| Symbol | |
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| ID | 4250899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 629743 |
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| End bp | 631461 |
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| Gene Length | 1719 bp |
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| Protein Length | 572 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638117104 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_732682 |
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| Protein GI | 113968889 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTAC TACTGATCGA TGATGATGAC GTCGATAGAA CTGCCATTAT TAGGGCATTG
CGACAGTCGA AATTAGCCTT TAACGTGATT GAGGCAAACT GTGCTTTCGA TGGTTTAAAC
CTAGCACTAG AGCGCCATTT TGACGGCATA TTACTCGATT ATTTGTTGCC CGATGCTAAT
GGATTGGAAG TGTTGATCAA ACTCAACTCT ATGACTCAGG AACAAACAGT CGTGTTAATG
TTGAGTCGCT ATGAAGATGA AAAACTGGCG CAGCGTTGCA TCGAGTTAGG TGCGCAGGAT
TTTTTACTGA AAGATGAAGT CAATTCAAGA ATCTTAAGCC GTTCAATTCG TTACGCCAAA
CAACGTGCCT CTATGGCGCT AGCCTTACGA AATAGCCACC AAAAACTAAA AGAATTGGCC
GAGCACGATT CGCTCACTAA ATTAATGAAT CGCTATGGGT TTGAGTTGTG TCTGAATCGA
GCGATTGCGA GGGCTAAACG CAGTAATGAT TTTTTAGCGG TAATATTACT CGATCTCGAT
GATTTTAAAG CGATTAATGA CACATTGGGG CATCAAACGG GTGACATCCT ATTAGTAAAG
GTGGCGTCGA GGTTAAGTTC GGTATTGCGA GATGGGGATG TTATTGCACG CTTAGGCGGT
GATGAGTTTG TGGTGCTGGT GACCGACAAT GACTACAAAT ACTTCCCCAT GATAGTCGCC
AATCGCCTGC TGAAGGCTTT CGAAGAAGTG TTTGGTCTTG GGGATAACGA TGTCATGATC
GGTGCCAGTA TTGGAGTCGC CTTTTATAAC GAGGCGGCAT CCAATAGCTC CGAATTGATG
AAATGTGCCG ATATCGCCAT GTATCGCGCG AAAAAAATGG GCCGTAACCA GATCCAATTT
TATTCCGAAG CGTTAGACCG TGAAGTGCGT TATCGCAATC ATATCGAATC TAGTCTGAGA
ATGGCTCAGA AGCAGAATGA ACTTAAAGTT TACTATCAGG CGCAAGTCGA TTCGAAAACA
CACCAAATTA TCGGTATGGA AGCGTTAATC CGTTGGTTGC ATCCACAAGA TGGATTGATT
TCACCGGACC AGTTTCTGCC CATTGCTGAA GAAATCGGAC TGATGGAGGA AATTGGAGAT
TGGATCCTGC TTGAGGCGTG CCGACAGGCG CAGCAATGGC TGAAGCAGTT AGCTCCTACG
GGACATAGTT TTACCATGGC GGTAAACTTG TCAGCATCGC AAATTGGTCA TATTGATCTC
TATGAGAAAA TTGTGAAAAT GCTAGCCGAA ACAGGGCTTT CACCAAAGGC GCTGGAATTA
GAGATTACCG AAAACTGTTT GATTGAAGAA CCCCATGAGC ATGCCAAGGT GCTGGATAAA
ATTGCGCAAC TCGGGGTGCG ATTTGCCCTC GATGACTTTG GCACAGGTTT TTCGTCATTA
GAGCATATAA AGCTGTTTCC TATCAGTGTG TTAAAAATCG ACAAGAGCTT TATCGCCTCC
TACGATAAGG ATGAAAAGGA CGCTCGGTTA CTCACGGCAC TACTCAATTT TGCCTATGGT
TTTAATGTCA CATCTGTTGC TGAAGGGATT GAAACCGTTG AACAAGCCGA GTTTTGCACC
GAAAGACACT GTGACGTGTT GCAGGGGTAC CTTTTCTCAC GCCCCATAGA AGCAAGTGAA
TTTGAAGCAA AGTTCATCAT TCCTTTACTT CCTAAATAG
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| Protein sequence | MDLLLIDDDD VDRTAIIRAL RQSKLAFNVI EANCAFDGLN LALERHFDGI LLDYLLPDAN
GLEVLIKLNS MTQEQTVVLM LSRYEDEKLA QRCIELGAQD FLLKDEVNSR ILSRSIRYAK
QRASMALALR NSHQKLKELA EHDSLTKLMN RYGFELCLNR AIARAKRSND FLAVILLDLD
DFKAINDTLG HQTGDILLVK VASRLSSVLR DGDVIARLGG DEFVVLVTDN DYKYFPMIVA
NRLLKAFEEV FGLGDNDVMI GASIGVAFYN EAASNSSELM KCADIAMYRA KKMGRNQIQF
YSEALDREVR YRNHIESSLR MAQKQNELKV YYQAQVDSKT HQIIGMEALI RWLHPQDGLI
SPDQFLPIAE EIGLMEEIGD WILLEACRQA QQWLKQLAPT GHSFTMAVNL SASQIGHIDL
YEKIVKMLAE TGLSPKALEL EITENCLIEE PHEHAKVLDK IAQLGVRFAL DDFGTGFSSL
EHIKLFPISV LKIDKSFIAS YDKDEKDARL LTALLNFAYG FNVTSVAEGI ETVEQAEFCT
ERHCDVLQGY LFSRPIEASE FEAKFIIPLL PK
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