| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0543 |
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| Symbol | |
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| ID | 4250897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 627149 |
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| End bp | 629302 |
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| Gene Length | 2154 bp |
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| Protein Length | 717 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638117102 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_732680 |
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| Protein GI | 113968887 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATGG ATAGTTTTCC CGAGTCTTTC AACTCCTCAA AAAGCGTTTA TGCCAGCGTG
ATCAGTTCCA GTTGGCTGAT GTTGCTCGCC GCCATTTTTT TCATGGGAAT ATCTTGGTAT
GTCCTCGAAG AATATTTAAG AGACCGTGGT GAAGAGCGCT TTAATAATAA TGTGCAAGAC
CTTATTGGTG CCGTAAGCAG CAGGATGTCA GCTTACGCGC AAGTTTTACG TGGCGGTGTA
GGGCTATTTC TCGCTTCTGA TGGCGTTACG CGCCATGAAT GGCAACTCTA TGTTTCTAAT
GCCCGACTCT CTGAATATTA TCCTGGTATT CAAGGTTTAG GATTTGCACA ACTTTTAACG
CCAGCGACCT TGGATGCATT TACTCGAGAA GTACAACAGG AAGGGGTTGT TGATTACAGG
GTAGCCCCCT CAGGGAATAG AGAACTCTAT TGTGCTATCA AATACTTAGA GCCATTTGAT
TGGCGGAATC AACGGGCGCT TGGTTTTGAC ATGTGTTCAG AATCGACGCG ACGCACAGCC
ATTTTGCATG CTATTGCTAC AGGGTTTCCT ACCGCGTCGG GTAAGGTCAC CTTAGTGCAA
GAAACCCCTG ACGACACCCA AGCCGGTATT TTAATGTATG CCCCTTTATA CCATGGTCAG
CCGATAACGG AGGAAGAACG TAAACAACAG GCCATAGGCG TTGTTTACGC CCCATTTCGT
ATGAACGACC TGATGCAAGG CATTATGGGA AAACGTTTTT CGGGCTTAAA ACTGGCGATT
TACGATGGGA TTGAGGCTAA CAAGGATACT CTGATGTTTA CTAGCCACAC CGCACTCCCT
TCCGCAGATG ATGTTTTTTA TCAATCCCAG TTAGAGACAA TGGAAGGTCA AGTATGGCGT
TTGGAAGTGT CCTCTGAATC ACGATTTATC TCGAGCTCTG AACAAACGCA AAGCATATGG
TTACAGGTAA TTGGAAGTGC GTTTATTTTA GTCCTGTTCT ACTCAGTGCT AACTATGGCG
CGAAATCGCT ATCAAGAATC TCGATTAACG GCAGAGTTAA TCGCTAACGA AAAACGCTTT
CGCCTCGTCA TTGAAGCTTC GCCGAGTGCG CTTTTTATGG TGGATAGGGC GGGTATTATT
ACCTTAGTTA ATACCCATGC TGAACGCTTA TTTGGTTATG CAAGAGATGA GCTGCTCGGC
CGTTCGATCA ATATGTTACT TCCCGAAGCG CTGAGAGATG TGCATCAACA GCATATGGGG
AATTACCTGG TTCAGCCGAT TGCGAAAAAT ATGTCACTAC GGGATGACTT GTTTGGCTGT
TGTAAAGATG GGACGCGCCT AGCGATTGAA GTTGGGTTGA CACCTATCCA CTTCAGCAAT
GGGGTGTCGA TTCTGGCGAC CATTAACAAT GTGTCGGAGC GTAAGCGGAT TGAAGCGCAG
CGCATTGAAC ATACCGCTGA ACTTGAGCGC ATCAACAAGG AACTTGACCA GTTTGCCTAT
ATTGCCTCTC ACGATCTGAA ATCACCCCTG CGTGGCATAG AGCAATTAAC TAACTGGTTA
AGTGAAGATC TAGCCGAAAA CACCGATGAA AATGTCCAAA AATATCTAGG GTTAATCCAA
AGCCGTATTC AACGTATGGT ACTACTACTC GACGGGTTAT TGATGTTTTC GCGTATTGGG
CGGGTTGATG CAGAGCGAGT TGAAGTCGAT TCGCGGCAAC TGATCGAAGA CATGTTTGCC
TTAGTTGCCC CGCCGCAGGG GTTCAGCTTA GCTCTTGAAG GGAATTTCCC AAGGTTTAAG
ACAGTGAAAA CCCTGTTAGA ACTGGTGATT AGAAACTTAA TCAGCAATGC GATTAAACAC
CACGATAAGG GCGAAGGCGT CATCAAAGTG ATATGTGAAA CCTCGAATCA TCATTATTGG
TTTAGCGTGA TTGATGATGG GCCAGGGATT TCTAGCCGTT TTCATGGGAA GGTATTCCAA
ATGTTCCAGA CCCTTAGACC AAGAGATGAA GTCGAAGGCA GTGGTTTGGG ACTCTCTTTA
GTTAAAAAGA CAGTAGAAAG TCTCGGCGGA AAAATTCAAC TAGAATCAGA GGGGCGGGGT
TGCTGTTTCA GATTTAGCTG GCCAATGCAC ATAGTCAACA AGGAGGGGAT ATGA
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| Protein sequence | MDMDSFPESF NSSKSVYASV ISSSWLMLLA AIFFMGISWY VLEEYLRDRG EERFNNNVQD
LIGAVSSRMS AYAQVLRGGV GLFLASDGVT RHEWQLYVSN ARLSEYYPGI QGLGFAQLLT
PATLDAFTRE VQQEGVVDYR VAPSGNRELY CAIKYLEPFD WRNQRALGFD MCSESTRRTA
ILHAIATGFP TASGKVTLVQ ETPDDTQAGI LMYAPLYHGQ PITEEERKQQ AIGVVYAPFR
MNDLMQGIMG KRFSGLKLAI YDGIEANKDT LMFTSHTALP SADDVFYQSQ LETMEGQVWR
LEVSSESRFI SSSEQTQSIW LQVIGSAFIL VLFYSVLTMA RNRYQESRLT AELIANEKRF
RLVIEASPSA LFMVDRAGII TLVNTHAERL FGYARDELLG RSINMLLPEA LRDVHQQHMG
NYLVQPIAKN MSLRDDLFGC CKDGTRLAIE VGLTPIHFSN GVSILATINN VSERKRIEAQ
RIEHTAELER INKELDQFAY IASHDLKSPL RGIEQLTNWL SEDLAENTDE NVQKYLGLIQ
SRIQRMVLLL DGLLMFSRIG RVDAERVEVD SRQLIEDMFA LVAPPQGFSL ALEGNFPRFK
TVKTLLELVI RNLISNAIKH HDKGEGVIKV ICETSNHHYW FSVIDDGPGI SSRFHGKVFQ
MFQTLRPRDE VEGSGLGLSL VKKTVESLGG KIQLESEGRG CCFRFSWPMH IVNKEGI
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