Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0524 |
Symbol | |
ID | 4251647 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 603446 |
End bp | 605053 |
Gene Length | 1608 bp |
Protein Length | 535 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638117083 |
Product | EmrB/QacA family drug resistance transporter |
Protein accession | YP_732661 |
Protein GI | 113968868 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACAA TTGCTGCGGC ACCTGAAGCT ATCGCCGCGG GGGCTACACC GAGCGAATAT GAGCGTGGTA GTCGCCGTTC GTGGATTGCT GTTTTCGGTG GTTTGATTGG CGCCTTTATG GCGATCCTCG ATATTCAAAT CACCAATGCC TCGATGAAGG AAATCCAAGG AAGTCTCGGC GCTACGCTGG AGGAAGGCAG TTGGATTTCA ACGGCTTATC TGGTTGCCGA GATGATTGCG ATCCCGCTCT CGGGTTGGTT AAGCACAGGG CTTTCGGTCA GGCGTTATCT GTTGTGGACC ACAGCTGCCT TTATCTTTGC CTCTATTCTG TGTTCGATTT CGTGGAACCT CGAGGCCATG ATCGCCTTTC GGGCGTTGCA GGGCTTCTTT GGTGGCGCGC TGATCCCGCT GGCCTTTCGG TTGATCTTAG AATTTTTACC CGAGAATAAA CGTGCCGTGG GGATGGCGCT CTTTGGCGTG ACTGCGACGT TTGCGCCCTC GATTGGCCCA ACCTTAGGTG GTTGGTTAAC CGAGCATTTT AGTTGGCATT ACCTGTTTTA TATCAACGTG CCGCCCGGAT TGCTGGTGAT GGCAATGTTG GCCTATGGTC TCGAAAAACG CCCTGTGGTG TGGGATAAAC TGAAGAATGC CGACTTAGCG GGCATTGTCA CTATGGCGCT AGGCATGGGC TGCCTCGAGG TCGTGCTTGA GGAAGGTAAC CGCAAGGATT GGTTTGGCTC GGATTTGATC CGCAATCTCG CCATCATTGC CGCGGTGAAT TTAGTGCTGT TTGTGTGGAT CCAGCTTAAA CGTAAAGATC CTTTAGTGAA TTTGCGCCTG CTCGGTAAAC GCGATTTTGT GCTTTCGACC ATAGCTTACT TTTTGCTGGG GATGGCTCTC TTTGGCGCTA TCTATTTGAT CCCACTTTAT TTGTCTCAAG TGCATGATTA CACGCCGCTG GAAATCGGCG AAGTCATTAT GTGGATGGGG TTCCCGCAGC TCTTGGTATT GCCATTAGTG CCGCGTTTAA TGCAACGTTT CGACGGGCGT TATTTAGCCG CCTTCGGCTT TTTTATGTTT GCCCTCAGTT ATTACATGAA TAGCCAAATG ACCGCCGATT ACGCAGGGCC GCAGATGATC GCCTCCCAAG TGGTGCGCGC CTTAGGCCAG CCCTTTATCT TGGTGCCCAT TGGCATGTTG GCGACGGCCC ATTTAAAGCC CCATGAGAAT CCTTCGGCTT CGACCGTATT GAACGTGATG CGTAACTTAG GCGGTGCCTT TGGTATTGCG CTGGTGGCGA CCTTAAGCGA TAACCTTGCC CGCGGTCATT TTGCCCATGT GAAGGAGTCT TTACCAGCGG TCAGCACACA GGCGCAGGAC TATTTGAATC AGAGCGCCAG TATGTTGCAA CAGGGTGGCT CGGATCCCTA TACCGCCTCG ATGCAGGCCA AAGCACTATT AGGGCAAACC ATGAGTCAGC AGGCCTATAT TCAAGCCTAT AACGATGTGT TTTTGATTAT GGGGGCCATG TTGTTAATTG CCGTGGTGGC TGTGCTGCTT ATCCGTAAAC CTCAAGGGCC AGTCGCCCAT GATGCGGCAA TTGAATAA
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Protein sequence | MSTIAAAPEA IAAGATPSEY ERGSRRSWIA VFGGLIGAFM AILDIQITNA SMKEIQGSLG ATLEEGSWIS TAYLVAEMIA IPLSGWLSTG LSVRRYLLWT TAAFIFASIL CSISWNLEAM IAFRALQGFF GGALIPLAFR LILEFLPENK RAVGMALFGV TATFAPSIGP TLGGWLTEHF SWHYLFYINV PPGLLVMAML AYGLEKRPVV WDKLKNADLA GIVTMALGMG CLEVVLEEGN RKDWFGSDLI RNLAIIAAVN LVLFVWIQLK RKDPLVNLRL LGKRDFVLST IAYFLLGMAL FGAIYLIPLY LSQVHDYTPL EIGEVIMWMG FPQLLVLPLV PRLMQRFDGR YLAAFGFFMF ALSYYMNSQM TADYAGPQMI ASQVVRALGQ PFILVPIGML ATAHLKPHEN PSASTVLNVM RNLGGAFGIA LVATLSDNLA RGHFAHVKES LPAVSTQAQD YLNQSASMLQ QGGSDPYTAS MQAKALLGQT MSQQAYIQAY NDVFLIMGAM LLIAVVAVLL IRKPQGPVAH DAAIE
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