Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0518 |
Symbol | |
ID | 4251641 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 596714 |
End bp | 599926 |
Gene Length | 3213 bp |
Protein Length | 1070 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 638117077 |
Product | CzcA family heavy metal efflux protein |
Protein accession | YP_732655 |
Protein GI | 113968862 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGCAAA AAGCAATCGA AGCCGCGATT AAAAATCGGC TATTAGTGGT ACTGGCACTG CTTGCTGTGG TGGCCGCCAG TGTCGCCATG TTGCCCAAAT TGAATCTGGA TGCCTTTCCC GATGTGACCA ACGTACAGGT GACCATCAAT ACCGCGGCCG AGGGGTTGGC CGCCGAAGAG GTGGAGAAGC TCATCAGTTA TCCGGTCGAA TCGGCCATGT ATGCCTTGCC GGCGGTGACC GAGGTGCGCT CACTTTCACG TACTGGCTTG TCCATTGTGA CCGTGGTATT TGCCGAGGGC ACGGATATTT ACTTTGCTCG CCAGCAAGTG TTTGAGCAGT TACAGGCGGC GCGGGAGATG ATCCCAAGCG GGGTGGGCGT GCCAGAAATT GGCCCTAACA CTTCTGGTTT GGGGCAGATT TATCAGTACA TTCTGCGGGC TGACCCTAGC TCTGGCATTA ATGCCGCCGA GCTGCGAAGC CTTAACGATT ACCTCGTTAA ACTGATCATG ATGCCGGTGG GCGGCGTGAC CGATGTTTTA TCCTTTGGCG GCGAGGTGCG TCAGTATCAA GTGCAGGTCG ACCCTAACAA GTTGCGAGCC TATGGCTTGT CGATGGCGCA GGTGAGTGAG GCGCTTGAGA GCAATAACCG CAACGCCGGT GGTTGGTTTA TGGACCAAGG CCAGGAGCAA TTGGTCGTGC GGGGTTATGG CATGTTACCC GCGGGTGAAG CGGGGCTTGC TGCTATCGCT CAAATTCCGC TGACTGAAGT GCGTGGCACA CCGGTGCGAG TGGGCGACAT TGCTAAGGTC GATTTTGGCA GTGAGATCCG CGTAGGGGCT GTGACTATGA CGCGCCGCGA TGAGGCGGGT CAGGCGCAAG CCTTAGGCGA AGTGGTTGCG GGCGTCGTGC TTAAGCGCAT GGGCGCCAAC ACTAAGGCGA CGATTGATGA TATCGATGCG CGGATTAATC TGATTGAGCA GGCGCTGCCC AAGGGCGTGT CCTTCGAGGT GTTTTACGAC CAAGCGGACT TAGTGGATAA AGCCGTTACC ACAGTGCGCG ATGCGCTGCT GATGGCTTTT GTGTTTATCG TGGTGATCTT GGCGCTGTTC CTTGTGAATA TTCGCGCCAC CCTGTTGGTG CTGCTGTCTA TCCCTGTGTC CATTGGTTTG GCGCTAATGG TGATGTCTTA CTATGGCCTT TCTGCCAACT TGATGTCTCT TGGTGGGTTA GCGGTGGCCA TTGGTATGTT GGTCGATGGT TCTGTGGTGA TGGTTGAGAA TATTTTCAAA CATTTAACTC AGCCAGACCG CCGTCACTTA GCTCAGGCGA GAAGCCGCGC GGATGGCGAA GTCGACCCAT ACCATGGCGA TGAAGATGGC AGTGTTCGCG CCGTTGAAGC GGATAACAGC ATGGCCGTGC GCATCATGCT GGCGGCGAAA GAGGTTTGCA GTCCGATCTT CTTCGCGACC GCCATCATCA TTGTGGTGTT TGCGCCGTTA TTTGCGCTGG AAGGGGTTGA GGGCAAGTTG TTCCAACCTA TGGCGGTCAG CATTATTTTG GCGATGATTT CCGCTTTACT GGTGGCCCTG ATCGCCGTGC CTGCACTGGC GGTTTATCTG TTTAAGCGTG GCGTCGTGCT GAAGGAGAGC GTCGTGTTAG TACCTTTAGA CTCAGCCTAT CGCAAGCTGC TGAGTGCTAC CCTAGCTCGG CCAAAGTTGG TGATGATCAG CGCGCTGCTG ATGTTTGCCA TGAGTATGGT TCTGCTGCCA AGGCTGGGTA CCGAGTTTGT GCCCGAGCTA GAGGAAGGCA CTATTAACCT TAGGGTGACG CTGGCGCCGA CCGCGAGCCT TGGCACTTCT TTAGATGTGG CGCCAAAGCT TGAGGCCATG TTGCTGGAGT TTCCCGAGGT GGAATATGCC TTGAGCCGTA TCGGTGCGCC AGAATTAGGC GGCGATCCTG AGCCTGTCAG CAATATCGAA GTCTATATCG GCCTTAAACC CATCGAAGAA TGGCAATCGG CTAGCTCGCG TTTGGAGCTG CAGCGGCTGA TGGAGGAAAA GCTCAGTGTC TTCCCCGGAC TGCTACTCAC CTTCTCACAA CCGATTGCGA CGCGGGTCGA TGAGTTGCTC TCTGGGGTAA AGGCGCAGTT GGCGATTAAG CTTTTTGGCC CTGATTTAGA TGTCTTATCA GAAAAGGGAC AAGTGCTCAC CGATCTGGTG GCGAAAATTC CCGGTGCCGT GGATGTGTCC CTCGAGCAGG TCAGTGGTGA GGCGCAGCTG GTGGTGCGGC CAGACCGCTC GCAGCTTGCC CGTTATGGCA TCAGCGTCGA CCAAGTGATG TCGCTAGTCA GCCAAGGAAT TGGTGGTGCA AGCGCTGGAC AGGTAATCGA CGGTAACGCG AGATACGACA TCAATTTGCG CCTCGCCGCC GAGTATCGCA GCAGCCCAGA TGTGATTAAA GATTTACTCC TTAGCGGCAG CAATGGTGCC ACAGTGCGTT TAGGTGAGGT GGCCAGTGTT GAGGTGGAAA TGGCGCCGCC GAATATTCGC CGTGACGATG TGCAGCGCCG TGTGGTGGTG CAAGCCAACG TGGCGGGTCG GGACATGGGA TCTGTGGTCA AGGATATCTA TGAGCTGGTG CCTCAGGCCG ATTTGCCCGC GGGATACACA GTGATTGTGG GTGGTCAGTA TGAGAATCAG CAGAGGGCAC AACAAAAGCT GATGTTGGTA GTGCCTATCT CTATCGCCTT GATTGCCTTG CTGTTGTACT TCTCCTTTGG TGCGGTGAAG CAGGTCTTAT TGATCATGGC AAACGTGCCC CTGGCATTGA TCGGCGGTAT CGTGGCGCTG TTTGTCAGCG GCACTTATCT GTCGGTACCG AGCTCCATTG GTTTTATCAC GCTGTTTGGG GTGGCGGTGC TCAATGGCGT GGTGTTAGTG GACTCGATTA ATCAGCGCAG GCAGAGCGGC GAGTCGCTCT ATGACTCGGT TTACGAAGGC ACGGTTGGCC GTTTACGCCC CGTGCTGATG ACGGCATTGA CCTCGGCCTT GGGCTTGATC CCCATCTTAG TGTCATCGGG TGTGGGTAGC GAAATCCAAA AGCCGCTGGC GGTGGTGATT ATCGGCGGGC TGTTTAGCTC TACGGCACTG ACGTTATTGG TGTTACCGAC CCTGTATCGC TGGTTATATC GCCACGATAA GTCGCCCGCC TAG
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Protein sequence | MLQKAIEAAI KNRLLVVLAL LAVVAASVAM LPKLNLDAFP DVTNVQVTIN TAAEGLAAEE VEKLISYPVE SAMYALPAVT EVRSLSRTGL SIVTVVFAEG TDIYFARQQV FEQLQAAREM IPSGVGVPEI GPNTSGLGQI YQYILRADPS SGINAAELRS LNDYLVKLIM MPVGGVTDVL SFGGEVRQYQ VQVDPNKLRA YGLSMAQVSE ALESNNRNAG GWFMDQGQEQ LVVRGYGMLP AGEAGLAAIA QIPLTEVRGT PVRVGDIAKV DFGSEIRVGA VTMTRRDEAG QAQALGEVVA GVVLKRMGAN TKATIDDIDA RINLIEQALP KGVSFEVFYD QADLVDKAVT TVRDALLMAF VFIVVILALF LVNIRATLLV LLSIPVSIGL ALMVMSYYGL SANLMSLGGL AVAIGMLVDG SVVMVENIFK HLTQPDRRHL AQARSRADGE VDPYHGDEDG SVRAVEADNS MAVRIMLAAK EVCSPIFFAT AIIIVVFAPL FALEGVEGKL FQPMAVSIIL AMISALLVAL IAVPALAVYL FKRGVVLKES VVLVPLDSAY RKLLSATLAR PKLVMISALL MFAMSMVLLP RLGTEFVPEL EEGTINLRVT LAPTASLGTS LDVAPKLEAM LLEFPEVEYA LSRIGAPELG GDPEPVSNIE VYIGLKPIEE WQSASSRLEL QRLMEEKLSV FPGLLLTFSQ PIATRVDELL SGVKAQLAIK LFGPDLDVLS EKGQVLTDLV AKIPGAVDVS LEQVSGEAQL VVRPDRSQLA RYGISVDQVM SLVSQGIGGA SAGQVIDGNA RYDINLRLAA EYRSSPDVIK DLLLSGSNGA TVRLGEVASV EVEMAPPNIR RDDVQRRVVV QANVAGRDMG SVVKDIYELV PQADLPAGYT VIVGGQYENQ QRAQQKLMLV VPISIALIAL LLYFSFGAVK QVLLIMANVP LALIGGIVAL FVSGTYLSVP SSIGFITLFG VAVLNGVVLV DSINQRRQSG ESLYDSVYEG TVGRLRPVLM TALTSALGLI PILVSSGVGS EIQKPLAVVI IGGLFSSTAL TLLVLPTLYR WLYRHDKSPA
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