Gene Shewmr4_0518 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0518 
Symbol 
ID4251641 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp596714 
End bp599926 
Gene Length3213 bp 
Protein Length1070 aa 
Translation table11 
GC content55% 
IMG OID638117077 
ProductCzcA family heavy metal efflux protein 
Protein accessionYP_732655 
Protein GI113968862 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3696] Putative silver efflux pump 
TIGRFAM ID[TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTGCAAA AAGCAATCGA AGCCGCGATT AAAAATCGGC TATTAGTGGT ACTGGCACTG 
CTTGCTGTGG TGGCCGCCAG TGTCGCCATG TTGCCCAAAT TGAATCTGGA TGCCTTTCCC
GATGTGACCA ACGTACAGGT GACCATCAAT ACCGCGGCCG AGGGGTTGGC CGCCGAAGAG
GTGGAGAAGC TCATCAGTTA TCCGGTCGAA TCGGCCATGT ATGCCTTGCC GGCGGTGACC
GAGGTGCGCT CACTTTCACG TACTGGCTTG TCCATTGTGA CCGTGGTATT TGCCGAGGGC
ACGGATATTT ACTTTGCTCG CCAGCAAGTG TTTGAGCAGT TACAGGCGGC GCGGGAGATG
ATCCCAAGCG GGGTGGGCGT GCCAGAAATT GGCCCTAACA CTTCTGGTTT GGGGCAGATT
TATCAGTACA TTCTGCGGGC TGACCCTAGC TCTGGCATTA ATGCCGCCGA GCTGCGAAGC
CTTAACGATT ACCTCGTTAA ACTGATCATG ATGCCGGTGG GCGGCGTGAC CGATGTTTTA
TCCTTTGGCG GCGAGGTGCG TCAGTATCAA GTGCAGGTCG ACCCTAACAA GTTGCGAGCC
TATGGCTTGT CGATGGCGCA GGTGAGTGAG GCGCTTGAGA GCAATAACCG CAACGCCGGT
GGTTGGTTTA TGGACCAAGG CCAGGAGCAA TTGGTCGTGC GGGGTTATGG CATGTTACCC
GCGGGTGAAG CGGGGCTTGC TGCTATCGCT CAAATTCCGC TGACTGAAGT GCGTGGCACA
CCGGTGCGAG TGGGCGACAT TGCTAAGGTC GATTTTGGCA GTGAGATCCG CGTAGGGGCT
GTGACTATGA CGCGCCGCGA TGAGGCGGGT CAGGCGCAAG CCTTAGGCGA AGTGGTTGCG
GGCGTCGTGC TTAAGCGCAT GGGCGCCAAC ACTAAGGCGA CGATTGATGA TATCGATGCG
CGGATTAATC TGATTGAGCA GGCGCTGCCC AAGGGCGTGT CCTTCGAGGT GTTTTACGAC
CAAGCGGACT TAGTGGATAA AGCCGTTACC ACAGTGCGCG ATGCGCTGCT GATGGCTTTT
GTGTTTATCG TGGTGATCTT GGCGCTGTTC CTTGTGAATA TTCGCGCCAC CCTGTTGGTG
CTGCTGTCTA TCCCTGTGTC CATTGGTTTG GCGCTAATGG TGATGTCTTA CTATGGCCTT
TCTGCCAACT TGATGTCTCT TGGTGGGTTA GCGGTGGCCA TTGGTATGTT GGTCGATGGT
TCTGTGGTGA TGGTTGAGAA TATTTTCAAA CATTTAACTC AGCCAGACCG CCGTCACTTA
GCTCAGGCGA GAAGCCGCGC GGATGGCGAA GTCGACCCAT ACCATGGCGA TGAAGATGGC
AGTGTTCGCG CCGTTGAAGC GGATAACAGC ATGGCCGTGC GCATCATGCT GGCGGCGAAA
GAGGTTTGCA GTCCGATCTT CTTCGCGACC GCCATCATCA TTGTGGTGTT TGCGCCGTTA
TTTGCGCTGG AAGGGGTTGA GGGCAAGTTG TTCCAACCTA TGGCGGTCAG CATTATTTTG
GCGATGATTT CCGCTTTACT GGTGGCCCTG ATCGCCGTGC CTGCACTGGC GGTTTATCTG
TTTAAGCGTG GCGTCGTGCT GAAGGAGAGC GTCGTGTTAG TACCTTTAGA CTCAGCCTAT
CGCAAGCTGC TGAGTGCTAC CCTAGCTCGG CCAAAGTTGG TGATGATCAG CGCGCTGCTG
ATGTTTGCCA TGAGTATGGT TCTGCTGCCA AGGCTGGGTA CCGAGTTTGT GCCCGAGCTA
GAGGAAGGCA CTATTAACCT TAGGGTGACG CTGGCGCCGA CCGCGAGCCT TGGCACTTCT
TTAGATGTGG CGCCAAAGCT TGAGGCCATG TTGCTGGAGT TTCCCGAGGT GGAATATGCC
TTGAGCCGTA TCGGTGCGCC AGAATTAGGC GGCGATCCTG AGCCTGTCAG CAATATCGAA
GTCTATATCG GCCTTAAACC CATCGAAGAA TGGCAATCGG CTAGCTCGCG TTTGGAGCTG
CAGCGGCTGA TGGAGGAAAA GCTCAGTGTC TTCCCCGGAC TGCTACTCAC CTTCTCACAA
CCGATTGCGA CGCGGGTCGA TGAGTTGCTC TCTGGGGTAA AGGCGCAGTT GGCGATTAAG
CTTTTTGGCC CTGATTTAGA TGTCTTATCA GAAAAGGGAC AAGTGCTCAC CGATCTGGTG
GCGAAAATTC CCGGTGCCGT GGATGTGTCC CTCGAGCAGG TCAGTGGTGA GGCGCAGCTG
GTGGTGCGGC CAGACCGCTC GCAGCTTGCC CGTTATGGCA TCAGCGTCGA CCAAGTGATG
TCGCTAGTCA GCCAAGGAAT TGGTGGTGCA AGCGCTGGAC AGGTAATCGA CGGTAACGCG
AGATACGACA TCAATTTGCG CCTCGCCGCC GAGTATCGCA GCAGCCCAGA TGTGATTAAA
GATTTACTCC TTAGCGGCAG CAATGGTGCC ACAGTGCGTT TAGGTGAGGT GGCCAGTGTT
GAGGTGGAAA TGGCGCCGCC GAATATTCGC CGTGACGATG TGCAGCGCCG TGTGGTGGTG
CAAGCCAACG TGGCGGGTCG GGACATGGGA TCTGTGGTCA AGGATATCTA TGAGCTGGTG
CCTCAGGCCG ATTTGCCCGC GGGATACACA GTGATTGTGG GTGGTCAGTA TGAGAATCAG
CAGAGGGCAC AACAAAAGCT GATGTTGGTA GTGCCTATCT CTATCGCCTT GATTGCCTTG
CTGTTGTACT TCTCCTTTGG TGCGGTGAAG CAGGTCTTAT TGATCATGGC AAACGTGCCC
CTGGCATTGA TCGGCGGTAT CGTGGCGCTG TTTGTCAGCG GCACTTATCT GTCGGTACCG
AGCTCCATTG GTTTTATCAC GCTGTTTGGG GTGGCGGTGC TCAATGGCGT GGTGTTAGTG
GACTCGATTA ATCAGCGCAG GCAGAGCGGC GAGTCGCTCT ATGACTCGGT TTACGAAGGC
ACGGTTGGCC GTTTACGCCC CGTGCTGATG ACGGCATTGA CCTCGGCCTT GGGCTTGATC
CCCATCTTAG TGTCATCGGG TGTGGGTAGC GAAATCCAAA AGCCGCTGGC GGTGGTGATT
ATCGGCGGGC TGTTTAGCTC TACGGCACTG ACGTTATTGG TGTTACCGAC CCTGTATCGC
TGGTTATATC GCCACGATAA GTCGCCCGCC TAG
 
Protein sequence
MLQKAIEAAI KNRLLVVLAL LAVVAASVAM LPKLNLDAFP DVTNVQVTIN TAAEGLAAEE 
VEKLISYPVE SAMYALPAVT EVRSLSRTGL SIVTVVFAEG TDIYFARQQV FEQLQAAREM
IPSGVGVPEI GPNTSGLGQI YQYILRADPS SGINAAELRS LNDYLVKLIM MPVGGVTDVL
SFGGEVRQYQ VQVDPNKLRA YGLSMAQVSE ALESNNRNAG GWFMDQGQEQ LVVRGYGMLP
AGEAGLAAIA QIPLTEVRGT PVRVGDIAKV DFGSEIRVGA VTMTRRDEAG QAQALGEVVA
GVVLKRMGAN TKATIDDIDA RINLIEQALP KGVSFEVFYD QADLVDKAVT TVRDALLMAF
VFIVVILALF LVNIRATLLV LLSIPVSIGL ALMVMSYYGL SANLMSLGGL AVAIGMLVDG
SVVMVENIFK HLTQPDRRHL AQARSRADGE VDPYHGDEDG SVRAVEADNS MAVRIMLAAK
EVCSPIFFAT AIIIVVFAPL FALEGVEGKL FQPMAVSIIL AMISALLVAL IAVPALAVYL
FKRGVVLKES VVLVPLDSAY RKLLSATLAR PKLVMISALL MFAMSMVLLP RLGTEFVPEL
EEGTINLRVT LAPTASLGTS LDVAPKLEAM LLEFPEVEYA LSRIGAPELG GDPEPVSNIE
VYIGLKPIEE WQSASSRLEL QRLMEEKLSV FPGLLLTFSQ PIATRVDELL SGVKAQLAIK
LFGPDLDVLS EKGQVLTDLV AKIPGAVDVS LEQVSGEAQL VVRPDRSQLA RYGISVDQVM
SLVSQGIGGA SAGQVIDGNA RYDINLRLAA EYRSSPDVIK DLLLSGSNGA TVRLGEVASV
EVEMAPPNIR RDDVQRRVVV QANVAGRDMG SVVKDIYELV PQADLPAGYT VIVGGQYENQ
QRAQQKLMLV VPISIALIAL LLYFSFGAVK QVLLIMANVP LALIGGIVAL FVSGTYLSVP
SSIGFITLFG VAVLNGVVLV DSINQRRQSG ESLYDSVYEG TVGRLRPVLM TALTSALGLI
PILVSSGVGS EIQKPLAVVI IGGLFSSTAL TLLVLPTLYR WLYRHDKSPA