| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0487 |
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| Symbol | |
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| ID | 4250911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 556910 |
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| End bp | 558949 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638117046 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_732624 |
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| Protein GI | 113968831 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAGTA TGATCCCAGA AATAGGTCAC CTATTGCTCA TCATAAGTAC TGTGTTGGCA
TTATTCTCCA CAATCATTCA CTTTATTGGC ATTCATCAAC CACAGTTTTA TTTAATCGAG
TTCGGCAATA AATTATTTAA TGCCATGTTT ATAAGCTTAT TGAGCGCACT CTTATGCCTT
ATTTATGGCT TTATTAGCGA TGACTTTTCG GTTGCCTATG TGGCGAATCA TTCCAACAGC
CAACTCGCCC TCGGTTATAA AATTGCCGCA GTATGGGGCA GCCATGAAGG CTCTATGCTG
TTTTGGGTGT TCGCCATCGC GTTATGGGGT GCCATCATCA ATTGCCGCCA AGCGAGTAAA
TTCGTCGACT TAGATAACGC CGATGTGCAG ACGGATAAAG CCTACTTTGC ACGGCTACTG
GCGATTCTCG CGCTCGTTAT CCTCGGCTTT AATCTGTTTT TACTCTTTAC CTCCAATCCC
TTTGCCCGAT TACTGCCTAA CATCCCCATT GAAGGGCGCG ACCTCAATCC GATATTGCAG
GACATTGGCC TCATACTGCA CCCACCTATG CTGTTTTTAG GCTATGTCGG GCTAACGGTA
TGTTTTGCTG CGGCGCTAGC ATCCCTGCTG GGAGGCGTAT TAGTGCATCG TCACCTCGAA
TACTTGCGGC CTTGGGTATT ACTGGCATGG ATTTTCCTCA CGGGAGGCAA TGCCTTTGGT
TCTTGGTGGG CCTATAACGA ATTGGGTTGG GGCGGTTGGT GGTTTTGGGA TCCCGTTGAA
AATGCTTCTT TTATTCCTTG GCTAGTCGCC ACAGCGCTGG TGCATTCTTT AGTGCTGACC
AGAAAGACCC AAGGCTTTGC CCTCACCACG CTATTTTTGT GCATCTTGGC ATTTTCGCTG
AGTTTACTCG GCAGCTTTTT GGTGCGTTCC GGCATAGTGC AATCTGTGCA TGCCTTTGCG
GCAGATCCCA CCAGAGGCAT GTCAATCCTA TGTTTATTGG TGCTGTTTGT CGGCGCAGCG
CTGCTGATTT TTGCACTCAA AGCCCAAGCC TTGAAGCACG AGGTCAGCCC TAGTCTATTG
AGCAAAGAGA CACTGTTACT GCTTGGCATC ATAGTATTAG TGGTTGCAGC CTTTACCGTT
CTGCTGGGCA CCTTTTATCC CCTGCTATAC GAGTTGCTAG GCTTAGGCAC TCTGTCGGTC
GGCGCCCCTT ACTTTAATGC GATTTTTGTC CCACTGACCT TTATCGCGGT GATGCTAATG
GGCATAGCAC CGTTAATTGC TTGGGGACGA TCGCGCGGCA AGCCACTCAA GGTATTAGCC
TTGCCTTCTA TCGCCATTGT GATTATCGCG GCGCTAATGA GTTATCAAAC CCAAACCGAT
GGTGCTCTCT TCCTATTCCT TGGCTGCGCC AGTGCGTTGT TTTTACTCTG CTGTCTTGGG
GTGAGTGTAA CAGTGAAATC CAAAGCATTG ACGCCACCTA AGCCCGCCAT ATCGACAACA
TCAAAGCGCG CCAGATTAGC CATGCTAGTC GGCCATTTTG GTGTGGCAGT CAGCATTATC
GGCGCGACCT CGGTATCGTT TTTCGAGCAG GAAGCCTTGC TGCGTATGGG GCCTGGCCAA
GGTAAACCCC TTGCCGATTA TGTACTGGTC TACGAAAGCA CAGAACCAGT AGTAACCCCA
AGTTTTAGCG CGATTCAAGC CAATATCAGT ATCCGCGCAG CCAAGCAGGA TGACGTAGTG
CTGGGTTACC TCCATCCACA GCGACAAACT TTTAATAGTA ATGGCATGGA AGTGTCCCAT
GCGGGCATAG ACCACGGTTT TTGGCGGGAT CTCTATGTCT CTATGGGGCT GCAACTGAGC
GACACCGAAT ATCTGATCCG CATTAGCTAT AAGCCCTTGG CGACTTGGAT TTGGCTGGGT
GCTTTATTGA TGATGCTTGC GGGCGCGATT GCCGCTTGGC CAATCAAACA AAGCCACAGA
GTCGCACAAA CAAAGGCGCT GAATGTCAGT CGCTCACCAC AGGAGACAAT GACGTTATGA
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| Protein sequence | MISMIPEIGH LLLIISTVLA LFSTIIHFIG IHQPQFYLIE FGNKLFNAMF ISLLSALLCL
IYGFISDDFS VAYVANHSNS QLALGYKIAA VWGSHEGSML FWVFAIALWG AIINCRQASK
FVDLDNADVQ TDKAYFARLL AILALVILGF NLFLLFTSNP FARLLPNIPI EGRDLNPILQ
DIGLILHPPM LFLGYVGLTV CFAAALASLL GGVLVHRHLE YLRPWVLLAW IFLTGGNAFG
SWWAYNELGW GGWWFWDPVE NASFIPWLVA TALVHSLVLT RKTQGFALTT LFLCILAFSL
SLLGSFLVRS GIVQSVHAFA ADPTRGMSIL CLLVLFVGAA LLIFALKAQA LKHEVSPSLL
SKETLLLLGI IVLVVAAFTV LLGTFYPLLY ELLGLGTLSV GAPYFNAIFV PLTFIAVMLM
GIAPLIAWGR SRGKPLKVLA LPSIAIVIIA ALMSYQTQTD GALFLFLGCA SALFLLCCLG
VSVTVKSKAL TPPKPAISTT SKRARLAMLV GHFGVAVSII GATSVSFFEQ EALLRMGPGQ
GKPLADYVLV YESTEPVVTP SFSAIQANIS IRAAKQDDVV LGYLHPQRQT FNSNGMEVSH
AGIDHGFWRD LYVSMGLQLS DTEYLIRISY KPLATWIWLG ALLMMLAGAI AAWPIKQSHR
VAQTKALNVS RSPQETMTL
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