| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0460 |
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| Symbol | |
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| ID | 4250795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 522099 |
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| End bp | 524132 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638117019 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_732597 |
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| Protein GI | 113968804 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATT CCGAACAAGG ACTAGGCGCT AAGACCAGTG ACTGGCCCAA GGCGCTGTTT
TACACCGCGC TACTTTTCTC TATTTTTCAA ATCATTACCG CCGCCTTTCA TCCCGTATCG
ACCCAAGTTT TGCGGGCAAC CCACGTGGGC TTTTTACTCT TAGTCGTATT CTTGAGTTAT
CCGGCGGTGG GCAAGTCTCG CCCCTGGCAA CCCTTAGCCT GGGTGCTTGG CCTTGCGGGC
ATGGCAACGG CCGCCTATCA ATGGTTTTTT GAGGCCGACT TGATCCAGCG CTCCGGTGAA
CTCACCGATG CCGATATGGT AATTGGCGTG GTGTTGATTG TTTTAGTGTT TGAAGCCGCG
CGGCGGGTGA TGGGCTGGGC GCTGCCGATT ATCTGCTGTA TTTTCTTGGC CTACGGCTTA
TTCGGCCAAT ATCTCCCCGG TGACTTAATG CACCGTGGCT ACGGCGTTGA CCAAATTATC
AATCAGTTAT CCTTCGGTAC CGAAGGGCTC TACGGCACAC CAACCTATGT GTCGGCTACC
TATATCTTCC TGTTTATTCT CTTTGGTGCA TTTTTAGAGC AAGCGGGGAT GATCCGTCTG
TTTACCGATT TTGCCATGGG ATTATTCGGC CATAAACTCG GCGGCCCGGC GAAAGTGGCC
GTGGTTTCTT CGGCGATGAT GGGCACAATC ACGGGCTCGG GAGTTGCCAA CGTGGTGACC
ACGGGGCAAT TTACCATTCC CTTGATGAAG CGCTTCGGCT ACCGCCCCGC CTTTGCCGGC
GGTGTAGAAG CCACTTCCAG TATGGGCAGC CAAATTATGC CGCCCATCAT GGGCGCGGTG
GCCTTTATCA TGGCCGAAAC CATTAACGTG CCGTTTATTG AAATCGCCAA AGCGGCGTTA
ATCCCCGCAT TGTTGTATTT CAGCTCAGTG TTCTGGATGG TGCATCTGGA GGCCAAACGC
GCCAATCTCT GTGGTTTGCC TAAGGATCAA TGCCCCGATC CCTGGGCGGC AGTGAAGGAG
CGCTGGTATC TGCTGATCCC ACTGTTTATT TTGATTTACT TGCTGTTTTC GGGTCGTACG
CCGCTGTTTT CTGGCATGGT CGGTTTAGCA CTAACTTCGA TTGTGATCTT AGGCTCTGCG
ATTGTGCTGC GCCTACCTTC TAATGCGATG CGCTTCGCCT TTTGGATTGC CCTTGGGGTG
TTGTGTGCCG GCTTCTTCCA GATGGGAATC GCCGTCGTCT TTGGGGTCAT CGCCTTACTC
GTCGCTGTCT GCTGGTTTAT CAAAGGGGGT AAAGATACCC TGACCATCTG CCTGCACGCT
TTAGTCGATG GCGCTCGCCA TGCGGTGCCC GTGGGGATTG CCTGCGCCCT GGTTGGGGTG
ATTATCGGGA TCGTCTCGCT GACGGGGATT GCCTCAACCT TCGCCAGTTA CATCCTCGCC
GTGGGTCAAG ATAACCTCTT CCTCTCATTG GTGTTAACTA TGCTCACCTG CATGGTGTTA
GGCATGGGCA TCCCGAGTAT CCCTAACTAT ATTATTACCA GCTCGATTGC CGCCCCCGCG
CTGCTGGACT TAGGTGTGCC GCTGATCGTC TCCCATATGT TTGTGTTTTA TTTTGGAATT
ATGGCCGACC TCACGCCTCC CGTCGCCTTG GCCTGCTTTG CCGCTGCGCC AATCGCAAAA
GAATCGGGGC TGAAGATCAG TCTATGGGCG ATTCGCATCG CTATCGCTGG CTTTGTGATC
CCCTTTATGG CGGTTTACGA TCCGGCGCTT ATGCTACAAA GCGATAGCTG GCTTGCCATC
GGCTTTGTGA TGTTAAAAGC CACCGTAGGT ATTGGTATCT GGGGCGTGAT CTTCACCGGT
TTCTTACTGC AAAAACTCTA TTGGTGGGAG CGTGTTATCG GCTTCCTCGC CGGAGCCAGT
TTAATCCTTG CGACACCGCT CAGTGATGAA ATCGGCTTTG GACTGGCGCT ACTCTTTATC
GTGCAGCACA GCCTAAGAGC GCGCAAACTG AAACGTCTTG CCGAGCAGGG GTAA
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| Protein sequence | MSDSEQGLGA KTSDWPKALF YTALLFSIFQ IITAAFHPVS TQVLRATHVG FLLLVVFLSY
PAVGKSRPWQ PLAWVLGLAG MATAAYQWFF EADLIQRSGE LTDADMVIGV VLIVLVFEAA
RRVMGWALPI ICCIFLAYGL FGQYLPGDLM HRGYGVDQII NQLSFGTEGL YGTPTYVSAT
YIFLFILFGA FLEQAGMIRL FTDFAMGLFG HKLGGPAKVA VVSSAMMGTI TGSGVANVVT
TGQFTIPLMK RFGYRPAFAG GVEATSSMGS QIMPPIMGAV AFIMAETINV PFIEIAKAAL
IPALLYFSSV FWMVHLEAKR ANLCGLPKDQ CPDPWAAVKE RWYLLIPLFI LIYLLFSGRT
PLFSGMVGLA LTSIVILGSA IVLRLPSNAM RFAFWIALGV LCAGFFQMGI AVVFGVIALL
VAVCWFIKGG KDTLTICLHA LVDGARHAVP VGIACALVGV IIGIVSLTGI ASTFASYILA
VGQDNLFLSL VLTMLTCMVL GMGIPSIPNY IITSSIAAPA LLDLGVPLIV SHMFVFYFGI
MADLTPPVAL ACFAAAPIAK ESGLKISLWA IRIAIAGFVI PFMAVYDPAL MLQSDSWLAI
GFVMLKATVG IGIWGVIFTG FLLQKLYWWE RVIGFLAGAS LILATPLSDE IGFGLALLFI
VQHSLRARKL KRLAEQG
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