| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0458 |
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| Symbol | |
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| ID | 4250793 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 520634 |
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| End bp | 521620 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638117017 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_732595 |
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| Protein GI | 113968802 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTAGCGG ATTCTGCAGC ACAAATAAAG CAACTTCAGG CCGAAATCGC CGAACTTAAA
CGTGAAAATG CGCGGTTAAC GGCGCTCAAT AATCGCGCCG AAGAAAAACT GTTTGCCGCC
CTCGATGGCA ATGGCTTGTG TTTGTGGGAG CAGCATGTTC CCAGTGGCAA TCTCACCCTG
TTCAATGTGA AGTGGGGCGA ACTGCTCGGC TTTAGCCGCG AGGAGCTTCG CGCCCATGTC
GACAGCTGGA AAAGCAAACT TCATCCAGAG GATAAAGACT GGGTAATCAA AGCCTTTGAA
GACCATGTGA ATGGTAAGGC CGATTATTAT CAGGTCGTAC ATCGCATGCT GCACAAAGAT
GGCAGCATCA CTTGGGTGTC GGATCGTGGC CGCATTGTTG AGCGTCTACC CGATGGCACG
CCGCTGCGAA TGATGGGCAG CCATATCGAT ATCACTCAAG AAAAGCGCTA CGAGCTGGAT
TTAGCTCGGT TAGCTCATAG CGATCCTCTC ACCAACCTGA TGAACCGCCA AGCCATCACC
ACGGCCTTCG ATGAGTTATT GCAACCCGGC CAGCGTGGGG CGTTATTCTT TATCGATCTT
GATGGTTTTA AAGCCTTAAA TGATCACCAT GGTCACAAGT TTGGCGATAA CTTATTGGTG
CATGTGGCGC ATTCCTTAGT GGAGCATTCG GGTGCACAGG CAAAGATCGC GCGGCTCGGC
GGGGACGAGT TTGTGATTGT CCTGCCCACT TCGGATATCG AAGCCTTAGG TATGCTCGCG
CAATCCTTAT TGGATGTTTA TCGACAACGT TTCTTACTCG ATGGTTGCGA GGTGGCGATA
AGCCTGAGTA TTGGTATCGA TATTTTTGAG TACGGTGATC GTTTTGCTCA AAGCTGCGAT
CGCGCCGATG CCGCTATGTA TCGTATTAAA CACCAAGGGA AAAACGGCTA CAGTTTCTCT
CGGAATGAGA GCGCTATTGA CCGTTAA
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| Protein sequence | MVADSAAQIK QLQAEIAELK RENARLTALN NRAEEKLFAA LDGNGLCLWE QHVPSGNLTL
FNVKWGELLG FSREELRAHV DSWKSKLHPE DKDWVIKAFE DHVNGKADYY QVVHRMLHKD
GSITWVSDRG RIVERLPDGT PLRMMGSHID ITQEKRYELD LARLAHSDPL TNLMNRQAIT
TAFDELLQPG QRGALFFIDL DGFKALNDHH GHKFGDNLLV HVAHSLVEHS GAQAKIARLG
GDEFVIVLPT SDIEALGMLA QSLLDVYRQR FLLDGCEVAI SLSIGIDIFE YGDRFAQSCD
RADAAMYRIK HQGKNGYSFS RNESAIDR
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