Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_0439 |
Symbol | hemE |
ID | 4251913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 497447 |
End bp | 498511 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638116998 |
Product | uroporphyrinogen decarboxylase |
Protein accession | YP_732576 |
Protein GI | 113968783 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGAAT TAAAGAATGA TCGTTATTTA CGCGCCCTAC TAAAACAGCC TGTTGATATG ACCCCAGTGT GGATGATGCG TCAAGCTGGC CGTTATCTTC CTGAATATAA AGCGACTCGC GCTCAAGCGG GTGACTTCAT GTCTTTATGT AAAAACCATG AATTGGCTTG TGAAGTAACG CTACAACCGC TGCGTCGTTA TGAGTTGGAT GCAGCAATTC TGTTTTCCGA TATTCTGACT GTTCCCGATG CGATGGGTTT AGGTCTGTAT TTTGAGGCGG GCGAAGGCCC ACGTTTTGAG CGCCCAACAG ACACTATCGA TGCCATCAAA AAATTAGCCG TTCCCGATCC AGAAGATGAT CTGGGTTATG TGATGAAAGC GGTTAGCACT ATTCGCCGTG AACTGAATGG TCAAGTGCCA TTGATCGGTT TCTCTGGTTC TCCTTGGACA CTCGCGACTT ACATGGTTGA AGGTGGCTCG AGCAAAACCT TCGAAAAAAT TAAGAAGATG GCCTACGCAG AGCCAGCGGC GCTGCATATG TTACTCGACA AGTTAGCCGA TTCTGTGACT CTGTACCTGA ATGCACAGGT TGCTAACGGT GCTCAATCGC TGATGATCTT CGACTCATGG GGCGGCGCCT TATCGCACAC GGCTTACCGT GAATTCTCAC TGCGTTATAT GCAGAAGATT GTCGATGGCC TGACTCGTTT TGCCGATGGC CGCCAAGTAC CAGTGACCTT ATTCACTAAG GGCGGTGGCT TATGGTTAGA AGCCATGGCA GAAACTGGCT GTGATGCTTT AGGTTTAGAC TGGACTGTCG ATATTGCCGA TGCCCGTCGC CGTGTCGGCC ACAAAGTGGC GCTTCAGGGC AACATGGATC CTTCTATGCT GTACGCGCCA ATTCCACGTA TCGAAGAAGA AGTGGCTCAA ATTCTGGCGG GCTATGGTGA AGGTACAGGC CATGTGTTTA ACTTAGGCCA TGGTATTCAC CAGCACGTTG ACCCAGAGCA TGCGGGTGCC TTTATCAAGG CGGTTCATGC TCAATCTAAG CAGTATCATA AGTAA
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Protein sequence | MAELKNDRYL RALLKQPVDM TPVWMMRQAG RYLPEYKATR AQAGDFMSLC KNHELACEVT LQPLRRYELD AAILFSDILT VPDAMGLGLY FEAGEGPRFE RPTDTIDAIK KLAVPDPEDD LGYVMKAVST IRRELNGQVP LIGFSGSPWT LATYMVEGGS SKTFEKIKKM AYAEPAALHM LLDKLADSVT LYLNAQVANG AQSLMIFDSW GGALSHTAYR EFSLRYMQKI VDGLTRFADG RQVPVTLFTK GGGLWLEAMA ETGCDALGLD WTVDIADARR RVGHKVALQG NMDPSMLYAP IPRIEEEVAQ ILAGYGEGTG HVFNLGHGIH QHVDPEHAGA FIKAVHAQSK QYHK
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