| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0426 |
|---|
| Symbol | |
|---|
| ID | 4251900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 473097 |
|---|
| End bp | 473948 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638116985 |
|---|
| Product | regulatory protein AmpE |
|---|
| Protein accession | YP_732563 |
|---|
| Protein GI | 113968770 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3725] Membrane protein required for beta-lactamase induction |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCATTAT TTTCATTACT GGTCGCCATT CTTGTGGAAC GATTGAAGTT CCTTCCCGCC
TCGTGGCAGA GCGATCGCGT GCTGCAATCC TATCAATCGA CTTTTTTTGG TGACAAAGCC
TCGTTAACCA GTACCAGTAT GTTGCTCGCT TTAGTGCTGC CGGCTTTAGT GGTGCATATA
TTAGGTTGGG TTGCGTCAGG CATGTTTTGG GGGCTGTTAA CTCTCGCCCT GTGGGTGGTA
GTGGCAATTA TTTGCTTTAA TCATCAAAAA CAGCGCGATA GCTTTAAAAA GTATATGCAG
GCGGCGTGTC GCTCCGACGT GCAAGCCTGT TACCACTATG CCGCCGAATT AGATTGCAGT
GAGTGTTTAG ATACGGTGTC TGAAAAAGAC TTAGGCGCCA AGGTCGGGCA GAGTGTTGCC
TGGATCAACT ATCGCTACTA TGGCGCCGTG GCATTATGCT TTATCTTCCT AGGCCCAGTT
GGCGCAGTCT TATATTGCAC CGCGCGTTTT TACGCTGAAG AGAATATGCG AAAATCCCTC
AACTTACCGT TAATTGACGA CATTATGTTC GTTCTGGATT GGATCCCGAG TCGGATATTT
TCCTTTGGCT ATGCGCTCAG TGGTCAGTTT AGTGAAGGGC TCACGGCTTG GCGTGACCAT
GCCTTAAATA TCAATGCGAG TGCCAGAAGG GTGGTGACAG AAACGGCGTT AGCCTCCCAG
CCGCTGCCAG AGGAGTCGAG TGCACCAGTT TGTGTACAGT CGACCTTGGC ATTATTAGTT
TTAAGTAAAC GCAACTTTAC GCTGATGGTT GCGGTGCTGT CGCTGTTGAC CATTTTTGGC
CTAGTGACCT AA
|
|---|
| Protein sequence | MALFSLLVAI LVERLKFLPA SWQSDRVLQS YQSTFFGDKA SLTSTSMLLA LVLPALVVHI
LGWVASGMFW GLLTLALWVV VAIICFNHQK QRDSFKKYMQ AACRSDVQAC YHYAAELDCS
ECLDTVSEKD LGAKVGQSVA WINYRYYGAV ALCFIFLGPV GAVLYCTARF YAEENMRKSL
NLPLIDDIMF VLDWIPSRIF SFGYALSGQF SEGLTAWRDH ALNINASARR VVTETALASQ
PLPEESSAPV CVQSTLALLV LSKRNFTLMV AVLSLLTIFG LVT
|
|---|
| |