| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0420 |
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| Symbol | |
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| ID | 4251963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 465080 |
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| End bp | 466789 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638116979 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_732557 |
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| Protein GI | 113968764 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCATCTA CAGGCCTTCA TTTAGGTTTA TCTACCTTAT TTATTCGTAA AGGCCTGCTA
AATGAAGAGC AGATGGCGGG CGCTATCGCT AAATCCAGAC AGACAAAACA GGCACTCGTT
AGCACCCTAG TACAAACTAA GCTGATTTCG GCACGCTCGG TTGCCGAACT TTGCTATGAA
GAATATGGCA CCCCGCTGCT AGATTTAGCC GAGTTTGAAC TCAGTGCCAT TCCCGAAGAA
TTTACCAATA AAAAGCTGAT TGAAAAGCAC CGCTGTTTAC CCTTATTTAA ACGCGGTAAT
CGCCTCTACA TTGCGACATC AGACCCTACA AATATTGCTG CACTTGAAGA GTTTCAATTC
AGTGCGGGCC TACATGCCGA AGCCATTCTA GTTGAAGAAG ATAAGCTCGC TAAAGCCCTC
GAAAAGGTAC TCGAAGAGGA TATTACCAGC CTTGATTTAG GAGGTATGGA TGAAGCGGCT
TTAGCCGGCA TAGAAGTTAC CGATACCGAT AAACGCCAAG ACGAGAATAC AAGTGACGGT
AGTGATGATG CACCAATCGT CATTTATATC AATAAGATAT TAACCGATGC AATTCGTAAG
GGGGCATCAG ATCTTCACTT TGAACCCTAT GAAAAACGCT ACCGCATTCG TTTCCGTATC
GATGGTATTT TGCATGAAGT CTCCGAACCG CCAATTAGCC TAGCAGGGCG GTTATCGGCG
CGCTTAAAGG TAATGTCGAA ACTCGATATT GCCGAACGCC GCGTTCCTCA GGATGGCAGG
ATTAAGATGA AGCTTTCCCG CACTAAGTCC ATCGACTTTC GGGTGAGCAC ATTACCGACG
CTCTGGGGCG AAAAAATTGT AATGCGGATA TTAGATTCCT CCTCCGCACA GCTCGGCATT
GAAAAACTAG GTTATGAACC CGATCAAGAA AAGCTTTACC TTGAGATGCT CGCCAAACCC
CAAGGGATGA TCTTAGTCAC AGGTCCTACA GGTTCGGGTA AAACGGTTTC GCTTTATACA
GGGTTAAATA TCCTCAATAC TGCCGAGCGC AATATCTCTA CCGCCGAAGA CCCGGTAGAA
ATCAACCTTG AAGGGGTTAA CCAAGTCCAT ATTAATTTAA AGGCGGGTTT AACCTTTGCT
TCAGCGCTAC GTTCCTTTTT GCGTCAAGAC CCCGATGTCG TTATGGTGGG AGAAATCCGC
GACCTTGAGA CCGCCGAAAT TGCCATTAAA GCCGCGCAAA CGGGTCACTT AGTATTATCA
ACACTGCACA CAAACTCGGC GGCGGAAACT TTGACCCGTT TAATTAATAT GGGTGTACCT
GGTTACAATA TCGCCAGTTC AGTGAATCTG ATTATTGCTC AGCGTCTTTC TAGACGACTC
TGCCCGGAAT GCAAGCAAGC AGAGCATATT CCAGAACATG AATTGCAACG TTTAGGCTTT
ACCGATGAGC AAATCGCTCA AGGCTTTACC ACCTATAAAC CTGTAGGTTG TGAGCATTGT
TCTGGCGGAT ATAAAGGACG GGTGGGTATT TACGAAGTAA TGAAAATGTC CGATGAAATC
GCTCGTACAA TTATGGAAGG CGGCAATTCA TTACAAATTG CCGAGCAAGC CAAAGCACAG
GGGATGCGTG ATCTGCGTCA ATCGGGCCTT CTTAAAGTTA TCCAAGGGGT AACCAGTATT
GCCGAAGTAA ACCGAGTCAC AAGTTTTTAA
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| Protein sequence | MPSTGLHLGL STLFIRKGLL NEEQMAGAIA KSRQTKQALV STLVQTKLIS ARSVAELCYE
EYGTPLLDLA EFELSAIPEE FTNKKLIEKH RCLPLFKRGN RLYIATSDPT NIAALEEFQF
SAGLHAEAIL VEEDKLAKAL EKVLEEDITS LDLGGMDEAA LAGIEVTDTD KRQDENTSDG
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PISLAGRLSA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT LWGEKIVMRI LDSSSAQLGI
EKLGYEPDQE KLYLEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTAER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLSRRL CPECKQAEHI PEHELQRLGF
TDEQIAQGFT TYKPVGCEHC SGGYKGRVGI YEVMKMSDEI ARTIMEGGNS LQIAEQAKAQ
GMRDLRQSGL LKVIQGVTSI AEVNRVTSF
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