| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0395 |
|---|
| Symbol | |
|---|
| ID | 4251728 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 442714 |
|---|
| End bp | 443436 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638116954 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_732532 |
|---|
| Protein GI | 113968739 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTGTT ATCTTAGACC CCAGAATATT CGTGCGATCA GCTTCGATCT CGACGATACC
TTATACGATA ACGAGCCTCA TATTCTGAAT GCCGAAGCTG AGCTAACACA GTTTTTGCAT
CAGGCTTTTC CGCTGACTCA GGCTTGGCAA CCGCAGCAAT GGCGACTGCT CAAGTTACAG
TTGCTACAGC AAAATCCAGC CTTAGCCCAT GACACCTCGG CGGCGCGAAT TGCGACTCTG
CATAAAGGCC TTTCGCTGCT CGGTTATAGC GAGTCGGAGG CAAAACGGGG CGCGCAGGAA
GGTTTGGATT GTTTTTATTT CCATCGCAGC CATTTTCAGG TTTCAGACGA AGTCTTGGCA
CTGCTCACGC GCTTATCGGC CCATTTTCGG TTGATTGGTA TCACCAATGG TAATGTGGAC
GCACAACGCA TTGGCTTGAG TGAGGTGTTC GAGTTTGTGC TGCATCCTGG TAGTGGTGTG
CGGATGAAGC CTGCTAAAGA TATGTTTTCA CAAGCCTGTG AAAGGCTGGA TATCGGTTTA
GATGAACTGC TGCACGTGGG TGATAGTATG AATGCCGATG TTCGCGGTGC GCGCTTAGCG
GGCTGCCAGT CGGTCTGGCT CAACCCGAGT TTTGGCCGCG TGGCGTCGTT GCCCATTGCT
GCACTGTTAC CCCATATGGA AATTGCGACC CTCGATGCTC TGCTGGAGAT CTTGTTGCCT
TAA
|
|---|
| Protein sequence | MRCYLRPQNI RAISFDLDDT LYDNEPHILN AEAELTQFLH QAFPLTQAWQ PQQWRLLKLQ
LLQQNPALAH DTSAARIATL HKGLSLLGYS ESEAKRGAQE GLDCFYFHRS HFQVSDEVLA
LLTRLSAHFR LIGITNGNVD AQRIGLSEVF EFVLHPGSGV RMKPAKDMFS QACERLDIGL
DELLHVGDSM NADVRGARLA GCQSVWLNPS FGRVASLPIA ALLPHMEIAT LDALLEILLP
|
|---|
| |