| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0392 |
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| Symbol | dapF |
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| ID | 4251725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 440307 |
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| End bp | 441134 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638116951 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_732529 |
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| Protein GI | 113968736 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCCAAT TCACTAAGAT GCACGGACTG GGCAACGATT TTATGGTGGT CGATGGTGTC
ACGCAGAACG TGTTCTTTTC GCCTGAGCAG ATCCGCCGTT TAGCCGACCG TAACTTTGGT
GTCGGTTTCG ATCAACTTTT ACTGGTTGAG CCGCCCTATG ATCCCGATTT GGATTTTCAC
TATCGTATCT TTAATGCCGA CGGTGGTGAG GTCGAAAACT GCGGCAATGG CGCCCGTTGT
TTTGCGCGCT TTGTTCGTAA TAAAGGGCTG ACGAATAAGA ATAAAATTCG TGTAAGTACC
TCGGCGGGTA AGATGACTCT GCGCCTCGAA CGTGACGGTA CTGTGACTGT GAATATGGGC
GTGCCTGTGC TCGATCCTAG CCAAATTCCT TTCAAAGCCA AGAAGGCCGA AAAAACCTAT
CTGCTGCAAA CGTCGCAACA AACCTTTTTA TGTGGCGCGG CGTCGATGGG TAACCCCCAT
TGCGTGCTCG ATGTGGAAGA TGTTGCTAAC GCTAATGTCG CCGAGATTGG TGCACTGCTC
ACTAAGCATG AGCGTTTTCC GCGCGGAGTA AACGTCGGCT TTATGCAGGT AGTGAACTCG
GGCCATATCA AGCTTAGAGT TTATGAACGC GGTGCGGCCG AGACTTTAGC CTGTGGTACT
GGGGCTTGTG CCGCTGTGGT GGTTGGGCAA ATCCAAGGCA AACTCGATCA ACAGGTACGT
GTCGACTTGC CCGGGGGCAC CTTAACCATC AATTGGGAAG GCGAAGGCAA ACCCCTGTGG
ATGACGGGGC CAGCGCAGCA CGTTTACGAT GGACAAATTC AGTTATGA
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| Protein sequence | MIQFTKMHGL GNDFMVVDGV TQNVFFSPEQ IRRLADRNFG VGFDQLLLVE PPYDPDLDFH
YRIFNADGGE VENCGNGARC FARFVRNKGL TNKNKIRVST SAGKMTLRLE RDGTVTVNMG
VPVLDPSQIP FKAKKAEKTY LLQTSQQTFL CGAASMGNPH CVLDVEDVAN ANVAEIGALL
TKHERFPRGV NVGFMQVVNS GHIKLRVYER GAAETLACGT GACAAVVVGQ IQGKLDQQVR
VDLPGGTLTI NWEGEGKPLW MTGPAQHVYD GQIQL
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