| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0377 |
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| Symbol | |
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| ID | 4251938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 403049 |
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| End bp | 405679 |
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| Gene Length | 2631 bp |
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| Protein Length | 876 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638116932 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_732514 |
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| Protein GI | 113968721 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0140415 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAGGG ATGAAGATGG AACTACCCCG CCTCGAGCTC ATGAGGTTGA ACGCTTAAAA
AAGAGACTTA ATCGCCTCAA ATATTTGGCG CATAAGTATA AGCGTGCCGA AGTCGTTCAA
AATGCGTTAC TCGAATTATC CCATATTGCG ACGCAGGTTC CTTCCCTCGA AGAGTTCTAT
CTTGGTGTGC ATCACCACCT AAAGCAACTG ATCTCTGCCG ATAATTTTTT TATTGCCACT
CTAGATGTGA ATAGCGGAGA CATTTCTGTC CCCTTCTTCG CCGATGAAAA AGACGCCCAC
CCAGCCCAAC TCTATCCTGA ACAATCGCTC TCCACCCTGC TACAACAGGG ATTAACCGGT
TATGTCTTTC GCTCGGGTGA AACCTTATTG TGCGATGAGA CTAAAGTCGA TGAATTGGTT
CATGCTGGGG AGATACTGAA TCTCGGTTCG CCTTGTCACC TGTGGCTAGG CGTCCCCATT
AAACATGAAG GCATAGTGAC CGCGGTACTC GTAGTACAGA CCTATGATAC CAATGTAAAT
TACGGCGATA TCGAGGTCGA GTTAATGACC TTTATTTGCC ACCACATTGC CGGCGTGATG
GAAAGGCTTA AACATCAAGA ACAACTAGAA CAAGCCATTC AGCAACGCAC CAAGGAACTC
AGCCAAGCCT ACGATAAACT CAAGCAAGAA GTGTATGAGC GACGTAGAGC CGAGCGGTTG
CAAAAGTCGT TATTTGAGAT TGCTGAGCTT GCTAGCTCAG GCTCTGATAA CCCCGACTTC
TATGCCCAGC TACATAATGT TATCCGCCAT CTTATCCCCG CCAATAACTG TTATATCGCT
CTGCTGAATG AAGAAGGCAC TCACTTAACC TTCCCGTTTT ACGTGTCGCA ATTAGGCAAC
CAGCATCCAG GTTCAAGGCC CTTGCAGGAT GGGCTGACCG AGTATGTGCT CAAACACAAG
CGACCATTAT TGCTCGACCG AAATGATCTC AATGATTTAA TCATCTCTGG CGAGCTTTAC
GCTAAAGCCC CCGCACTAAA CCACACCCAA ACAATGCATC AATGGATAGG TATTCCACTG
TTTATCCATG ACGAAGTGCG TGGCGCCTTG ACCATCTACA GTTTCAGCAT GACCCAAAAC
TACCAAACTA AAGATTTGGA ATTGCTGACT TTTGTGTCCC AGCATATCGG TGCGGCCATC
GAGAAAAAGC TAACGGCAGA ATCTTTGCGC CGCAGCTATG AAGAATTAGA AGAAAAAGTC
GCGGCACGCA CCACGGCTCT TGCCGAGTTG AATAAGGATC TTGAAAAAGA AATCCGCCAA
CGCCGCAATA TGGAAGCCAA GCTAGTGCAT GATGCCAAGC ACGATGCGCT CACAGGGCTG
CCGAATCGCG CCATGTTTAT GGAGCGACTC AACCAAGCCA TAAAGCACGT GCGGCGCCAT
AGCCTAGAGC AGTTTGCCCT GCTCTTTATC GACCTTGACC GCTTTAAGCA AATTAACGAC
ACTATGGGGC ATTTAGAGGG GGATAGGTTC TTAATTGAAA CCGCTACCCG CCTACGCGCC
TGTATTCGCA GTAACGATAC CTTAGCCAGA CTCGGTGGCG ATGAGTTTGT CATCCTGCTC
GATAGCATTA ATGGTATTAA CGATGCCCGT GATGTTGCCG AGCGGGTGAT TCAAAAAATC
TCACTATCCT ATACCTTAGG GGCAATCGAG TTTCATTCGG GCGCCAGTAT TGGCATCACC
ATCAGTGGCA ATAAGCTAGA TACCAGTGAG TCTATGCTGC GCAATGCCGA CACCGCCATG
TACCAAGCCA AGGCGAATGG CAAAGGCTGT TATGTCATCT TCGACGATAG CGCCTCTCAG
CAAAAGATGC AGGACATTGC CTTCGAGAAT GATTTTAAAC AGGCATTACA AACCGGTGAG
TTACAACTGC AATTTTGCCC GATTGTCGAT TTACAGACGC AGCAAACCCA AGCATTAGAA
TGCCGTTTGA CTTGGGAACA TCCACAGTGG GGCACCATTC CACAGGAGAT CCTCAGCCAG
TTAGCCGAAC AAGCGAACCT GATGGTCGAA CTGGATAAGT ATACGATTAG CTTGCTGGAT
AAGAGCTATC ATCAACTACT TGCCAGCCAA GGGGATAAAG TTGAATTACA CCTTATGCTA
TCGAGCCAAC ATCTAAAGCA TAAGCACGCG CTGCGTGGAC TCAAAAACGC CCTAAAGCAG
ACTAAGCTTG CGCTGCCACA GCTATGGCTG TTTTTTAATG AAAAGGCGTT AGTGCTGGAA
ACAGAGAATC ACATTAATGG CTTTGAGTTG TTGAAAAAGC TGGACGTGAA CTTGGGGATC
AGCCACTACG GCAGTGGCCA CAGCTCATTA AATAGTTTGT TATTCTTACC CATCAAGGGC
TTAAAGCTCG ATGCCAACAT CACCAAACAA TTGCAGGATG AGCAACACAT TAAGCTGATG
TCGGCTTACC AGAAAGCGGC TTCGACCTTA GACTTACAAA CCTTTGTCGA TGGCCTGCAA
TCCGCCGAGC AGATAAAAAT CTTCCACGCA TTAGGTTATC GCTTTGGCCA AGGCGGTGCC
TTAGCCTCAC CTTTTTTATT GTCAGACACC ACACAACAGG TCTGTGCCTG A
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| Protein sequence | MFRDEDGTTP PRAHEVERLK KRLNRLKYLA HKYKRAEVVQ NALLELSHIA TQVPSLEEFY
LGVHHHLKQL ISADNFFIAT LDVNSGDISV PFFADEKDAH PAQLYPEQSL STLLQQGLTG
YVFRSGETLL CDETKVDELV HAGEILNLGS PCHLWLGVPI KHEGIVTAVL VVQTYDTNVN
YGDIEVELMT FICHHIAGVM ERLKHQEQLE QAIQQRTKEL SQAYDKLKQE VYERRRAERL
QKSLFEIAEL ASSGSDNPDF YAQLHNVIRH LIPANNCYIA LLNEEGTHLT FPFYVSQLGN
QHPGSRPLQD GLTEYVLKHK RPLLLDRNDL NDLIISGELY AKAPALNHTQ TMHQWIGIPL
FIHDEVRGAL TIYSFSMTQN YQTKDLELLT FVSQHIGAAI EKKLTAESLR RSYEELEEKV
AARTTALAEL NKDLEKEIRQ RRNMEAKLVH DAKHDALTGL PNRAMFMERL NQAIKHVRRH
SLEQFALLFI DLDRFKQIND TMGHLEGDRF LIETATRLRA CIRSNDTLAR LGGDEFVILL
DSINGINDAR DVAERVIQKI SLSYTLGAIE FHSGASIGIT ISGNKLDTSE SMLRNADTAM
YQAKANGKGC YVIFDDSASQ QKMQDIAFEN DFKQALQTGE LQLQFCPIVD LQTQQTQALE
CRLTWEHPQW GTIPQEILSQ LAEQANLMVE LDKYTISLLD KSYHQLLASQ GDKVELHLML
SSQHLKHKHA LRGLKNALKQ TKLALPQLWL FFNEKALVLE TENHINGFEL LKKLDVNLGI
SHYGSGHSSL NSLLFLPIKG LKLDANITKQ LQDEQHIKLM SAYQKAASTL DLQTFVDGLQ
SAEQIKIFHA LGYRFGQGGA LASPFLLSDT TQQVCA
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