| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_0365 |
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| Symbol | |
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| ID | 4251559 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 390978 |
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| End bp | 392651 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 638116920 |
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| Product | threonine dehydratase |
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| Protein accession | YP_732502 |
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| Protein GI | 113968709 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1171] Threonine dehydratase |
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| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form
[TIGR01127] threonine dehydratase, medium form |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATCTC TCGCATCGTC GCAAACGGAG CAGGCTGAGG CCCAGTCCTC TCAAGTTCAA
TCCTCTCAAG TTCAGTCCGA TAAGGCGCAA TCGGGCACTT CTGCCTTAGA AAAGAGTCAG
CTTGCGCAAA GCTACCTGCA AAAAATCCTG CTGTCGTCGG TTTATGACGT TGCGAAAGTG
ACCCCACTCT CGAGCCTGAA TAAACTCTCG GCGCGTTTGG GCTGCCAAGT ATTTTTAAAG
CGTGAGGATA TGCAGCCTGT GCATTCCTTC AAGCTGCGTG GCGCCTATAA CCGTATCGCC
CAGTTAAGCC AAGCCGAATG TCAACGCGGC GTAGTGTGCG CCTCGGCGGG TAACCATGCT
CAAGGCGTGG CCATGTCAGC GGCCAGTCGT GGTGTGGATG CTGTGATTGT GATGCCCGAA
ACTACGCCAG ATATTAAAGT CGATGCGGTG CGCCGCTTGG GTGGCAACGT GGTGTTGCAC
GGCCAAGCCT TCGATCAGGC CAATGGCTTT GCGATGGAGA TGGCCGAGCA GGAGGGGCGG
GTGTATATCG CCCCCTTCGA TGACGAAGCC GTTATCGCAG GCCAAGGCAC TATCGCCCAA
GAAATGCTGC AACAGCAGCG CGACCTTGAA GTGGTATTTG TACCCGTGGG CGGCGGTGGC
TTAATTGCTG GGATTGCTGC CTATTACAAA GCGGTGATGC CACAGGTCAA AATTGTTGGG
GTGGAGCCTG AAGATGCGGC CTGCTTAAAA GCGGCGATGG AGGCGGGCGA GCCTGTCACA
CTCCCGCAGG TCGGCTTGTT TGCCGATGGA GTCGCGGTTA AACGTATCGG CACCGAGCCA
TTTCGCCTAG CTAAGTGGTT TGTGGATGAA GTGGTGACGG TAACGTCCGA CGAGATCTGC
GCCGCCGTTA AAGATATTTT TGAGGATACC CGCGCCATTG CCGAACCTGC AGGTGCTTTA
TCCCTTGCTG GGCTTAAAAA ATATGTCAGC ACCAATGCTA CGGGCGAGAG TGGCAAGGGT
GAGAAAGTCG CGGCGATTTT AAGTGGCGCG AATGTGAACT TCCACAGCCT ACGTTATGTG
TCGGAGCGTT GCGAGTTGGG TGAGCAAAAA GAAGCCGTGC TGGCGGTTAA AGTGCCCGAG
CGTCCCGGCA GCTTCCTGCG TTTTTGTGAG TTGCTCGAAA AGCGGGTGAT GACCGAATTT
AACTATCGTT TTAGCAGCCG CGATATGGCG GTGGTGTTTG CGGGTATTCG TTTGACCAAA
GGCCATGGCG AATTAGAGCA GATCATCAAT ACCTTAGAAG ATAATGGCTT CGAGGTGCAG
GACTTATCCG GTGACGAAAC CGCGAAATTA CATGTGCGCT ATATGGTCGG TGGTCATCCG
CCAGAGCCGT TAGAGGAGCG CCTATTTAGC TTCGAGTTTC CCGAGCATCC GGGGGCGCTG
CTGAAGTTTT TAACTACCCT GCAGAGCAAG TGGAATATCA GTTTATTCCA TTACCGTAAT
CACGGCGCGG CCTTTGGGCG AGTGCTGGCG GGGTTTGAAG TCCCCGAGGG CGATGCCTTG
CCGTTTCAGC AGTTTTTAAC TGAGCTGGGA TTTGTCTATC AAGAAGAGAC GCAAAGCCCT
GCTTATCAGC TGTTTTTGAA TGCCGGAAAA GGGAAAAAGA GCCTGCCTTT GTAG
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| Protein sequence | MLSLASSQTE QAEAQSSQVQ SSQVQSDKAQ SGTSALEKSQ LAQSYLQKIL LSSVYDVAKV
TPLSSLNKLS ARLGCQVFLK REDMQPVHSF KLRGAYNRIA QLSQAECQRG VVCASAGNHA
QGVAMSAASR GVDAVIVMPE TTPDIKVDAV RRLGGNVVLH GQAFDQANGF AMEMAEQEGR
VYIAPFDDEA VIAGQGTIAQ EMLQQQRDLE VVFVPVGGGG LIAGIAAYYK AVMPQVKIVG
VEPEDAACLK AAMEAGEPVT LPQVGLFADG VAVKRIGTEP FRLAKWFVDE VVTVTSDEIC
AAVKDIFEDT RAIAEPAGAL SLAGLKKYVS TNATGESGKG EKVAAILSGA NVNFHSLRYV
SERCELGEQK EAVLAVKVPE RPGSFLRFCE LLEKRVMTEF NYRFSSRDMA VVFAGIRLTK
GHGELEQIIN TLEDNGFEVQ DLSGDETAKL HVRYMVGGHP PEPLEERLFS FEFPEHPGAL
LKFLTTLQSK WNISLFHYRN HGAAFGRVLA GFEVPEGDAL PFQQFLTELG FVYQEETQSP
AYQLFLNAGK GKKSLPL
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