Gene Shewmr4_0316 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_0316 
Symbolrbn 
ID4251930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp343006 
End bp344019 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content50% 
IMG OID638116871 
Productribonuclease BN 
Protein accessionYP_732453 
Protein GI113968660 
COG category[S] Function unknown 
COG ID[COG1295] Predicted membrane protein 
TIGRFAM ID[TIGR00765] YihY family protein (not ribonuclease BN) 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.293845 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACTAAGA AGATAGAACT GGCACAAATT CAAGTCTTAT TCCTCGGGAT CTGGCGCTTC 
CTGCTGCATT TACGCCAGCG TTTAGTGGAA GATCAAATCA ATATCCGCGC GGGCCACCTA
GCCTATGTCA CCCTGTTATC CCTTGTGCCT ATGGTGGCTG TGACTATGTC TATGCTGTCG
GCTTTCCCTG TGTTTAAGGG GATCCGTGGC CAAATCGAAG CCTTCGTGTA CGAGAATTTT
CTGCCCGCGG CGGGCGATAC GGTACAAGTC TATATTAATG AATTTGTTGG TAATGCTTCT
AAGGGCACGG CTGTAGGGAT CGCGGCTCTT GTCGTGGTGG CGATTATGCT GATCTCCGCC
ATCGATAAAT CGCTGAATAA TATTTGGCGC ACTAAGGAAA AGCGTTCCGT GGTGGTGGCA
TTTTCCATGT ATTGGATGGT GATTACCTTA GGCCCTGTGC TGGTGGGCGC GAGCTTAGTG
GCGACTTCCT ACGTGGTGTC ATTAAAACTG TTTGAGGGCG ACGCATTATC TGGGGTGATG
CCACTGTTTA TCGAACGTTT ACCACTGTTT TTTTCTGTCG CCGCATTCTT ACTTTTATAT
ATGGTGGTGC CGAATCAAAA GGTGAAGTTT TGGCATGCGC TATTAGGCGC GGTAGTGGCG
GCGTTACTGT TCGAGTTGGG GAAAAAAGGT TTTGCCCTGT ATGTGACTAA ATTCCCAAGT
TATGAAGCCA TTTACGGCGC TCTGGCGACC ATTCCTATTC TGTTCGTTTG GGTATATTTA
TCTTGGATGA TAGTGCTGCT GGGCGCCGAA ATTACCGCGG CCATGCCCGA GTATTTGGAC
TATGAGTCCA GCAGCGATAT CAACGAAACT AACCTCGATG GTCAACCTTT AGCGGCGCAG
GATACACCCG CCGCGCAGCC AGAAACCACA TCCGGCCAAT CAACCCAAGT GCTTGAGACG
ACAGGCGAAC TCGCTGCAAC CGCGCCGCAA TCGACTACAC TGGATAAGCC GTAG
 
Protein sequence
MTKKIELAQI QVLFLGIWRF LLHLRQRLVE DQINIRAGHL AYVTLLSLVP MVAVTMSMLS 
AFPVFKGIRG QIEAFVYENF LPAAGDTVQV YINEFVGNAS KGTAVGIAAL VVVAIMLISA
IDKSLNNIWR TKEKRSVVVA FSMYWMVITL GPVLVGASLV ATSYVVSLKL FEGDALSGVM
PLFIERLPLF FSVAAFLLLY MVVPNQKVKF WHALLGAVVA ALLFELGKKG FALYVTKFPS
YEAIYGALAT IPILFVWVYL SWMIVLLGAE ITAAMPEYLD YESSSDINET NLDGQPLAAQ
DTPAAQPETT SGQSTQVLET TGELAATAPQ STTLDKP